Computational

MATLAB in Physics is a four lecture series in MATLAB that is offered to first year physics undergraduate students. This lecture shows how to use MATLAB to simulate physical systems using a range of methods. Projectile motion is analysed using the Symbolic Math Toolbox, then more complicated... Platforms: Matlab

MATLAB in Physics is a four lecture series in MATLAB that is offered to first year physics undergraduate students.This lecture shows how to use MATLAB to fit experimental data such as that obtained in undergraduate physics experiments. Non-linear fitting to a more complicated model function is... Platforms: Matlab

This is a little script that adds several Gaussian or Lorentzian functions with the appropriate full width at half max and height to generate and plot a spectrum. The input is an array containing frequency vs oscillator strength, desired fwhm of the peaks and method for generating the spectrum.... Platforms: Matlab

Engineers, scientists, and financial analysts frequently use optimization methods to solve computationally expensive problems such as smoothing the large computational meshes used in fluid dynamic simulations, performing image registration, or analyzing high-dimensional financial portfolios.... Platforms: Matlab

cThis lecture investigates the underlying linear algebra that forms the basis of MATLAB. Aly Kassam is the author of this lecture, it is being submitted under Matt McDonnell's name solely to fit it in with the rest of the lectures. The aim of this lecture series is to introduce students to... Platforms: Matlab

Schwarz, Shoelson & Amphlett, Retailers Of Fine MATLAB Cloth Since 1987, proudly announce another piece of visionary software: FPAT - A Fuzzy Pattern DetectorDid you ever listen to a toddler talk?Easily your brain finds words amongst the noisy babble...Did you ever think of faulty DNA?Easily... Platforms: Matlab

The enclosed files provide a nonlinear algorithm for controlling dynamical systems, particularly in regimes where linear control methods often fail, such as the targeting of states that are distant in phase space from the system dynamics (e.g., a fixed point at the center of a limit cycle). Four... Platforms: Matlab

I am describing a solution that allows you to break apart and run large amounts of your Matlab code in parallel on large computational pools. In order to provide the user with the familiar Matlab work environment, I glue back the remotely evaluated Matlab code via web services, such that the... Platforms: Matlab

This is a suite of MATLAB codes to calculate effective Eckart inertias for large amplitude torsions published by Bryan M. Wong, Ryan L. Thom, and Robert W. Field in The Journal of Physical Chemistry A 110, 7406 - 7413 (2006). The Eckart inertias are obtained by solving a system of transcendental... Platforms: Matlab

The Lagrangian Pendulum Spring model asks students to solve the Lagrangian for a spring-pendulum and then develop a model of it. It is distributed as a ready-to-run (compiled) Java archive. Double-clicking the ejs_CM_Lagrangian_pendulum_spring.jar file will run the program if Java is installed.... Platforms: Mac

surfit is a computer program which enables to calculate regular grid from various data (scattered points, 2D and 3D contours, surfaces, etc) in different ways (interpolation, approximation, inequalities, etc). surfit implements the original gridding method. surfit is an Open Source and Free... Platforms: *nix

The Chemistry Development Kit (CDK) is a scientific, LGPL-ed library for bio- and cheminformatics and computational chemistry written in Java. Platforms: *nix

A report generator written in python using sphinx and matplotlib SphinxReport is a report generator that is implemented as an extension to Sphinx. Its purpose is to facilitate writing scientific reports interpreting large and changing datasets. It is designed to assist the iterative analysis... Platforms: *nix

The Biomolecule Toolkit is a library for modeling biological macromolecules such as proteins, DNA and RNA. It provides a C++ interface for common tasks in computational structural biology to facilitate and standardize the development of molecular modeling, design and analysis tools. Platforms: *nix

Tissue Simulation Toolkit is a two-dimensional library for the Cellular Potts Model (Graner and Glazier 1992; Phys. Rev. Lett. 69, 2013), which is increasingly used by computational biologists to study tissue patterning and developmental mechanisms. Features . Solved some minor problems... Platforms: *nix

The RDXplorer is a computational tool for copy number variants (CNV) detection in whole human genome sequence data using read depth (RD) coverage. CNV detection is based on the Event-Wise Testing (EWT) algorithm recently published by our group. Platforms: *nix

ByoDyn (http://cbbl.imim.es/ByoDyn) is a software tool for the study of biochemical networks within the framework of systems biology. SBML compatible, ByoDyn is a group effort of the Computational Biochemistry and Biophysics Lab. Platforms: *nix

Navlib is a collection of algorithms created to solve the navigation problem for 2D non-holonomic vehicles. It includes code for computational geometry, system identification, path planning, and control. Written in C++ with python extensions. Platforms: *nix

WebM is a royalty-free, open, media file format designed for the web. WebM defines the file container structure, video and audio formats. WebM files consist of video streams compressed with the VP8 video codec and audio streams compressed with the Vorbis audio codec. The WebM file structure is... Platforms: *nix

The pomsets-core package implements the core functionality for workflow management in the cloud. pomsets is a computational workflow management system for your cloud infrastructure. pomset is short for "partially-ordered multiset". It is a mathematical model for defining concurrent processes... Platforms: *nix