Computational

MicroGP is designed as a computational approach for autonomously pursuing a goal defined by users. To this end, candidate solutions for the given task are repeatedly modified, evaluated and enhanced. MicroGP is an evolutionary algorithm since the alteration process mimics some principles of...

SDGB, also know as Software for Determining Balanced Graph is designed as a computational method for determining whether a given graph with weights on the vertices, is balanced. SDGB was developed with the help of the Java programming language and can run on multiple platforms.

Snifflib is a Java based numerical library designed to provide honest-to-goodness N-dimensional array construction and manipulation along with standard linear algebra functionality as well as statistics and computational routines in the Java language. for WindowsAll


Platforms: Windows

The project aims to extend the PHP scripting language to enable PHP developers to write bioinformatics applications more rapidly than if they had to start from scratch using 'vanilla php'.


Platforms: Windows, Mac, Linux

ccwatcher monitors the progress of computational chemistry calculations during runtime. It has both a GUI and a 'Command Line Interface' to which it parses important output and plots SCF energies. Avogadro plugin capability is planned.


Platforms: Windows, Mac, Linux

Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines. It contains pre-built components for common bioinformatics analysis tasks. These components can be arranged graphically to form highly-configurable pipelines. Each analysis component...


Platforms: *nix

Ericscript is a computational framework to detect gene fusions from paired end RNA-seq data with high sensitity and specificity.


Platforms: Windows, Mac, Linux

The Efficient XML Interchange (EXI) format is a very compact representation for the Extensible Markup Language (XML) Information Set that is intended to simultaneously optimize performance and the utilization of computational resources.


Platforms: Windows, Mac, Linux

gfit creates an interface between computational models and experimental data and provides tools for their analysis


Platforms: Windows, Mac, Linux

Geom4J is a computational geometry library for Java. It contains implementation of the most important computational geometry data structures and algorithms coded in pure Java, designed for ease of use and optimized for performance.


Platforms: Windows, Mac, Linux

The GridUnit project is a first effort to use the huge heterogeneity and distributed nature of Computational Grids to imporve the software testing process. It is an extension of the widelly adopted JUnit testing framework.


Platforms: Windows, Mac, Linux

Platform for parallel computation in the Amazon cloud, including machine learning ensembles written in R for computational biology and other areas of scientific research. Home to MR-Tandem, a hadoop-enabled fork of X!Tandem peptide search engine.


Platforms: Windows, Mac, Linux

The Instrument Element is a Grid/Cloud component that provides the computational/data Grid with an abstraction of real instruments, and Users with a more interactive interface to control them. More information: http://instrumentelem.sourceforge.net/


Platforms: *nix

JASA allows researchers in agent-based computational economics to write high-performance trading simulations using a number of different auction protocols. The software also provides base classes for implementing simple adaptive trading agents.


Platforms: Windows, Mac, Linux

This project is a Web Service based computational grid infrastructure written in Java. Once setup, it allows a user to submit job(s) to the grid to be scheduled for execution on the grid nodes.


Platforms: Windows, Mac, Linux

The FlashServer is a part of the MASSim project of the Computational Intelligence Group at the TU Clausthal, Germany and his main task is the visualization of the games as Flash videos. Currently the FS is not in use during the Multi-Agent Contest.


Platforms: *nix

A computational tool to design and annotate metabolic pathways from genome annotations


Platforms: Windows, Mac, Linux

The Moses Tool Suite is a collection of tools for visual modeling, simulation, analysis, synthesis, and visualization of computational systems.


Platforms: Windows, Mac, Linux

This project will include some tools to manage mysql replication and to help its integration in modern scientific computational GRID environment.


Platforms: Windows, Mac, Linux

The Open Modeling Interface and Environment (OpenMI) defines a standardized way to exchange data between computational models that run simultaneously. OpenMI aims to enhance process interaction representation in integrated environmental modelling.


Platforms: Windows, Mac, Linux