Chemical Structure Platypus Venom

The development and curation of a range of XML-based tools for using Chemical Markup Language (CML), including XSD XML Schemas for validation, datatyping and constraining CML documents and XSLT Stylesheets for transforming, filtering and rendering.

The Chemical Structures Project is a set of 3D structures of molecules in CML format. Each file contains also some physical properties, which can be access using a web browser or a CML file reader.

Collection of scripts converting structure data files into different formats (e.g. CTRL to POSCAR).


Platforms: Windows, Mac, Linux

The Data Structure & Algorithm Library (DSAL) is a library of classical data structure and algorithm.


Platforms: Windows, Mac, BSD, Linux

Generates XML containing database tables structure and allows easy XSLT sheet application using the gui interface


Platforms: Windows, Mac, Linux

The self-assembling structure simulator is a project to simulate the building of arbitrary 3D shapes from identical triangular components


Platforms: Windows, Mac, Linux

Structure Synth is a cross-platform application for generating 3D structures by specifying a design grammar. Even simple systems may generate surprising and complex structures. The design grammar approach was originally devised by Chris Coyne (for a 2D implementation see the popular Context Free...


Platforms: Mac

As an example, suppose you had taken 155 seconds of data of the location (x,y,z) of a particle as a function of time (t). It is convenient to put that all into a struct, such as this one:>> datadata = t: [155000x1 double] x: [155000x1 double] y: [155000x1 double] z: [155000x1 double]If you wanted...


Platforms: Matlab

Genetic Programming (GP) generates nonlinear input-output models of dynamical systems from input-output measurement data. This GP-OLS toolbox applies Orthogonal Least Squares algorithm (OLS) to improve the search effeciency of GP.It can be used for static equation discovery or structure...


Platforms: Matlab

Intent: Provides a useful 1D data structure (or container) for storing an ordered heterogeneous set of elements.Motivation: MATLABdlT« R2009a provides the "containers.Map" data structure for storing an unordered heterogeneous set of elements - the Map ADT is a container that is indexed with a...


Platforms: Matlab

for personal use only.1: the interest rate structure calculation and rules.2: the interest rate model, used frequently in real world.


Platforms: Matlab

How do you know if a chemical equation is balanced? What can you change to balance an equation? Play a game to test your ideas! Sample Learning Goals * Balance a chemical equation. * Recognize that atoms are conserved in a chemical reaction. * Describe the difference between coefficients and...


Platforms: Mac

HOPPscore is a simple application for evaluating the structural quality of theoretical or experimental protein structures. Protein are evaluated by comparing structure fragments to a reference dictionary of fragments from high resolution structures. Features . Protein Structure Quality...


Platforms: *nix

Rubytree is a simple to use general purpose tree data structure implementation in Ruby. It provides easy access methods for navigating the hierarchy, as well as for accessing the nodes. Rubytree project also provides ability to marshal the entire tree structure. Whats New in This Release: -...


Platforms: *nix

FLV::VideoTag is a flash video file data structure Perl module. METHODS This is a subclass of FLV::Base. $self->parse($fileinst) Takes a FLV::File instance and extracts an FLV video tag from the file stream. This method throws exceptions if the stream is not a valid FLV v1.0 or v1.1 file....


Platforms: *nix

Perl6::Gather is a Perl module that implements the Perl 6 gather/take control structure in Perl 5. SYNOPSIS use Perl6::Gather; @list = gather { # Try to extract odd numbers and odd number names... for (@data) { if (/(one|three|five|nine)$/) { take qq{$_}; } elsif (/^d+$/ && $_ %2) {...


Platforms: *nix

KnowledgeRoot is a knowledge base system that lets you structure your content in a tree. KnowledgeRoot project integrates FCKeditor to make adding content easy. Knowledgeroot use PHP and MySQL or PostgreSQL. Whats New in This Release: - This release fixes insecure upload of fckeditor.....


Platforms: *nix

Data::Diff is a data structure comparison module. SYNOPSIS use Data::Diff qw(diff); # simple procedural interface to raw difference output $out = diff( $a, $b ); # OO usage $diff = Data::Diff->new( $a, $b ); $new = $diff->apply(); $changes = $diff->diff_a(); Data::Diff computes the...


Platforms: *nix

MLDBM is a Perl module to store multi-level hash structure in single level tied hash. SYNOPSIS use MLDBM; # this gets the default, SDBM #use MLDBM qw(DB_File FreezeThaw); # use FreezeThaw for serializing #use MLDBM qw(DB_File Storable); # use Storable for serializing $dbm = tie %o, MLDBM...


Platforms: *nix

Erwin Data Structures is a library that is meant to be the ultimate data structure library for mixed usage of C and C++. Arbitrary key and value types are implemented by template files that dont use C++ templates, but are instantiated by a Perl script. This way, mixed usage in C and C++ is...


Platforms: *nix