Bsmapper Sequence Mapper

BSmapper - Sequence mapper for bisulfite sequencing reads for DNA methylation studies. Can handle Sanger and 454 reads for mapping to whole genomes or target regions.

ncRNA Mapper is a computer program that gives more insight in the localization of sequencing fragments. Given that sequencing of RNA gives reads at fixed base-positions, ncRNA Mapper analyzes the alignments (generated by Short Sequence Location Mapper; SSLM) by: visualizing them, retrieving the...

TB antibiotic resistance mapper was developed as a specialized tool that can help you map sequencing reads with the MTB reference genome (H37Rv) using NCBI blast, in order to find out mutation sites. Now you can quickly discover mutations with the help of this instrument.


Platforms: Windows

Short Sequence Location Mapper loads the sequences, then aligns them and finally graphs and tables can be generated for one or more datasets at the same time. SSLM typically works with a BLAST data output file of short Solexa reads mapped to RNA subjects (for example pre-miRNA sequences). The...


Platforms: Windows

This is a very simple command-line port mapper (port redirector). The program is able to work in the hidden mode.


Platforms: Windows

Handy Image Mapper is the best way to create image mapped images for your website. Rectangular, circular, and polygonal regions to arrange your web site navigation: attach any part of an image to different links. Handy Image Mapper will generate the HTML code to be pasted into your HTML...


Platforms: Windows, Other

KDE Network Mapper is a network discovery, probing, and scanning tool. It is a KDE GUI for nmap. Individual hosts or entire subnets can be scanned simultaneously, and the results are shown in the interface as queries finish, so the user neednt wait for the entire scan to finish..


Platforms: *nix

UML::Sequence is a Perl module to render UML sequence diagrams, often by running the code. SYNOPSIS use UML::Sequence; my $tree = UML::Sequence->new(@methods, @outline, &parse_method); print $tree->build_xml_sequence(Title); To use this package, or see how to use it, see genericseq.pl...


Platforms: *nix

UML::Sequence::JavaSeq is a Perl module for use with genericseq.pl script, works on compiled Java programs. SYNOPSIS genericseq.pl UML::Sequence::JavaSeq Hello.methods Hello > Hello.xml seq2svg.pl Hello.xml > Hello.svg OR genericseq.pl UML::Sequence::JavaSeq Hello.methods Hello |...


Platforms: *nix

Chart::Sequence is a sequence Perl class. SYNOPSIS use Chart::Sequence; my $s = Chart::Sequence->new( Nodes => [qw( A B C )], Messages => [ [ A => B => "Message 1" ], [ B => A => "Ack 1" ], [ B => C => "Message 2" ], ], ); # or # my $s = Chart::Sequence->new( SeqMLInput =>...


Platforms: *nix

Sequence Analysis project is a collage of coding projects which I have written over the past several years for various clients in my work as a bioinformatics consultant. These clients have graciously allowed me to release these works into the public domain as freeware for Macintosh OS X in...


Platforms: *nix

Creates an Excel spreadsheet report about the video clips, audio clips and markers you've used in your edited sequence. The report includes sheets for: Clips, Sequence Markers, Clip Markers, Clip Filters, and Reels. Sequence Clip Reporter takes the tedious work out of creating clip usage reports...


Platforms: Mac

Virtual piano, guitar/banjo/mandolin etc, hammered dulcimer simulator and note mapper/composer lets you write and play back songs thru midi and see the notes played (animated) on a musical staff and scale, piano keyboard, guitar/banjo/mandolin, and hammered dulcimer images. You can change the...


Platforms: Windows

Dungeon Mapper is a tool that helps you map your dungeons for your next role playing adventure. Dungeon Mapper supports a basic set of ground and objects tiles. Save, load, export and print your outdoor, indoor, and underground dungeon maps as you wish.


Platforms: *nix

The fastest way to remove duplicates from a sequence depends on some pretty subtle properties of the sequence elements, such as whether they're hashable, and whether they support full comparisons. This script defines the unique() function that tries three methods, from fastest to slowest,...


Platforms: Windows, Mac, *nix, Python, BSD Solaris

This script contains a function that given a sequence and a number n as parameters, returns the th permutation of the sequence (always as a list).


Platforms: Windows, Mac, *nix, Python, BSD Solaris

This script allows you to split up a sequence in same-size (if possible) parts.


Platforms: Windows, Mac, *nix, Python, BSD Solaris

Getting min/max in a sequence script allows you to find the min/max value in a sequence as compared to a reference.


Platforms: Windows, Mac, *nix, Python, BSD Solaris

This function provides farey sequence, F(n), for any integer n.There's probably a more elegant solution out there, but I couldn't find it. Note: it doesn't prepend (0,1) and append (1,1)...


Platforms: Windows, Mac, *nix, Python, BSD Solaris

Tierra Internet Mapper is a set of PHP scripts working with MySQL, AT&T's WebDot and GraphViz software to dynamically build graphical maps of internet routes. This tool can be used to map out funnels in network traffic and organization of network.


Platforms: Windows, Mac, *nix, PHP, BSD Solaris