Bmc Bioinformatics Journal

AutoSOME is a new unsupervised multidimensional clustering method for identifying clusters of diverse shapes and sizes from large numerical datasets without prior knowledge of cluster number (BMC Bioinformatics, 11:117). Given the general nature of data clustering, AutoSOME has utility for a wide...

The package generates a feature table from a batch of LC/MS spectra in .cdf format. Instructions: http://www.sph.emory.edu/apLCMS/ References Bioinformatics. 25(15):1930-36. BMC Bioinformatics. 11:559.

CNV Workshop is a web-enabled platform for analyzing genome variation such as copy number variation (CNV). Learn about CNV Workshop in our associated BMC Bioinformatics manuscript: http://www.biomedcentral.com/1471-2105/11/74


Platforms: Windows, Mac, BSD, Linux

An R package that performs forward-backward fragment assembling segmentation. Reference: BMC Bioinformatics. 2007 May 3;8:145.


Platforms: Windows, Mac, Linux

This is the high throughput PCR primer design software that is used at the J. Craig Venter Institute. See: Li K, et al. 'Novel computational methods for increasing PCR primer design effectiveness in directed sequencing'. BMC Bioinformatics 2008, 9:191.


Platforms: Windows, Mac, Linux

PheMaDB is a web-based data management system to store and analyze OmniLog Phenotype Microarray data. The manuscript can be accessed here: http://www.biomedcentral.com/1471-2105/12/109. Chang WE et al. BMC Bioinformatics. 2011 Apr 20;12(1):109.


Platforms: Mac

ErmineJ performs analyses of gene sets in expression microarray data or other genome-wide data that results in rankings of genes. A typical goal is to determine whether particular biological pathways are "doing something interesting" in the data. The software is designed to be used by biologists...


Platforms: Mac

Just Journal is a blogging application. You can use it to create one or more blogs on a Web site. Just Journal allows registered users to comment on other blogs, list friends, consume and provide RSS feeds, and post public, friends only, or private journal entries. Just Journal has been tested...


Platforms: *nix

VLinux Bioinformatics workbench is a Linux distribution for Bioinformatics. It is easy to use, no installation required, CD-based distribution based on Knoppix 3.3. VLinux Bioinformatics Workbench includes a variety of sequence and structure analysis packages. It is an Open source product...


Platforms: *nix

A secure personal journal for everyday inspirational living. Write your daily thoughts, opinions, and life views in your own journal. It also includes a password login dialog box for keeping prying eyes out of your personal business. Insert special characters, emotional icons, pictures, and...


Platforms: Windows

You give the I Ching Journal module what the lines are and it's job is to look up the hexagram number(s) for you, nicely highlight any changing lines, and provide an archiveable/searchable record. InstallationUnpack in your modules folder (usually /sites/all/modules/) and enable under Administer...


Platforms: Windows, Mac, *nix, PHP, BSD Solaris

Zeitgeist is a tool for easily browsing and finding files on your computer. It keeps a chronological journal of all file activity and supports tagging and establishing relationships between groups of files. GNOME Zeitgeist provides the GUI (Graphical User Interface) for Zeigeist.


Platforms: *nix

A secure personal journal for everyday inspirational living. Write your daily thoughts, opinions, and life views in your own journal. It also includes a password login dialog box for keeping prying eyes out of your personal business. Insert special characters, emotional icons, pictures, and...


Platforms: Windows, Windows 7

A secure personal journal for everyday inspirational living. Write your daily thoughts, opinions, and life views in your own journal. It also includes a password login dialog box for keeping prying eyes out of your personal business. Insert special characters, emotional icons, pictures, and...


Platforms: Windows, Windows 7

Do you use journaling? If so, you know how long it can take to turn it on or off for each contact. Now you can turn journaling on or off for all contacts within a folder with just one click. Normally, each contact has to be individually selected but with the help of Journal All Contacts, all...


Platforms: Windows, Windows Vista, 7

The Site Journal for Windows (95/98/2000/ME/NT/XP) is intended to help site-supervising architects, engineers, and construction companies document site inspections. All important data, events and associated site photos are conveniently processed and managed with this slim and fast program. This...


Platforms: Windows

"My Audio Journal" software helps you capture and treasure all the special, or not so great, moments of your life.


Platforms: Windows

Pure Perl module to interface with the BMC Impact Manager Web Services (IIWS) to send and receive events and data, run queries, etc. Note that this project is in a very early stage of development.


Platforms: Windows, Mac, Linux

This is a journal application that categorizes keywords based on a user chosen list of categories, as well as by person, place, thing, and time. It has content management features as well as a build feature that can generate its own operating system.


Platforms: Windows, Mac, Linux

ReadSeq is a program and library for conversion of biosequence data from one format to another, useful in various bioinformatics programs and services. It is written in Java, though an earlier version in C remains available.


Platforms: Windows, Mac, Linux