Biological

Biological Annotation Tool is a general-purpose high speed environment for manipulating biological sequence annotations in multiple input and output formats. A plugin-style API permits much extensibility.

Workbench for visualizing biological networks (regulatory, interaction, and metabolic). Can be used as a front-end for BNDB datawarehouses, but also as stand-alone tool.

BioPAX - A Data Exchange Format for Biological Pathway Information


Platforms: Windows, Mac, Linux

Biopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. The...


Platforms: Windows

Biopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. The...


Platforms: Mac

Simulation describing the electrophysiological behavior of a biological neuron (nerve cell). Two sets of membrane kinetics are included: Hodgkin-Huxley and Schwarz for unmyelinated and myelinated axons.


Platforms: Matlab

PathVisio is a tool for displaying and editing biological pathways. In a sense PathVisio lets you draw pathways as you would in any drawing program, like PowerPoint or Photoshop. But the difference is that PathVisio can understand the biological context of a pathway, because you can link...


Platforms: Mac

The Biomolecule Toolkit is a library for modeling biological macromolecules such as proteins, DNA and RNA. It provides a C++ interface for common tasks in computational structural biology to facilitate and standardize the development of molecular modeling, design and analysis tools.


Platforms: *nix

NCBI recently started a biological image search feature (http://www.ncbi.nlm.nih.gov/images). This extension adds a figure summary in these figures. The summaries are derived from UWM's FigureSearch (http://figuresearch.askhermes.org). Note that the summary appears only for figures in open access...


Platforms: *nix

Data Pilot expands data analysis options available in Microsoft Excel with nonparametric statistical methods. The methods used in Data Pilot provides the most relevant results even with small numbers of samples, without any assumptions on distribution of the original sample. This is especially...


Platforms: Windows

This is very unusual screensaver modeling biological life. Watch your own green colonies randomly appeared on your screen. Every time you run MicroLife screensaver you will get new configurations. Enjoy free screensaver! Please enjoy more SaversPlanet screensavers from different categories: 3D,...


Platforms: Windows, Windows 8, Windows 7

Blast Viewer gives you a graphic interface to view reports produced by search systems in NCBI and EBI BLAST databases.Blast Viewer is a simple to use software designed for the daily analysis of biological sequences. It lets you view and analyze the enormous quantities of data that come from a...


Platforms: Windows

This is very unusual screensaver modeling biological life. Watch your own green colonies randomly appeared on your screen. Every time you run MicroLife screensaver you will get new configurations. Enjoy free screensaver!


Platforms: Windows

Biomolecule Toolkit project is an Open Source library for the structural modeling of biological macromolecules. The toolkit provides a C++ interface for common tasks in computational structural biology, to facilitate the development of molecular modeling, design, and analysis tools. Whats New...


Platforms: *nix

MPEx is a small, easy to use application designed to help you explore the topology and other features of membrane proteins by means of hydropathy plots based upon thermodynamic and biological principles. The program is based on sliding-window analysis that represents an amino acid sequence as a...


Platforms: Windows

BioDWH is a simple, very easy to use tool specially designed to offer you a bioinformatics data warehouse software kit that integrates biological information from multiple public life science data sources into a local RDBMS. This application provides up-to-date integrated knowledge, platform and...


Platforms: Windows

VitaPad is a small, easy to use, Java based application, specially designed to offer you a program to help you visualize and analyze pathways. You can use this software not only to visualize biological pathways but also to map experimental data to them. for WindowsAll


Platforms: Windows

IsTa is a small, simple application that will help you find closed frequent item sets by intersecting transactions, which is based on the insight that an item set is closed if it is the intersection of all transactions that contain it. Such an approach can be highly competitive in special...


Platforms: Windows

Carpenter is a handy, easy to use application specially designed to help you find closed frequent item sets with the carpenter algorithm, which enumerates transaction sets, in contrast to many other frequent item set mining algorithms, which enumerate item sets. Such an approach can be highly...


Platforms: Windows

CWC Simulator is a C++ implementation of CWC (Calculus of Wrapped Compartments). This package is basically a rewriting-based calculus for the representation and simulation of biological systems.


Platforms: Windows