Bioedit Sequence Alignment Editor

Bio::AlignIO::bl2seq is a bl2seq sequence input/output stream. SYNOPSIS Do not use this module directly. Use it via the Bio::AlignIO class, as in: use Bio::AlignIO; $in = Bio::AlignIO->new(-file => "inputfilename" , -format => bl2seq); $aln = $in->next_aln(); This object can create...

Genovar is a stand-alone software built using the Java programming language in order to detect unknown genomic variants. The program can also analyze SNP-related copy number variant regions, and comprehensively visualize genomic data such as array CGH and sequence alignments results.

Molecular-based diagnostic assays are the gold standard for infectious diseases today, since they allow a rapid and sensitive identification and typing of various pathogens. While PCR can be designed to be specific for a certain pathogen, a subsequent sequence analysis is frequently required...


Platforms: Windows

A bioinformatics program for advanced RNA sequence analysis. All analyses are fully integrated in one single, user-friendly, and intuitive software application. Some analyses are: - Secondary structure prediction - Graphical view and editing of secondary structure - Tabular view of structures...


Platforms: Mac

MayaChemTools is a collection of command line Perl scripts to work with SD files, CSV/TSV text files, Sequence/Alignments files, PDB files, and databases: - splitting, joining, merging, and sorting SD and text files; merging text files into SD files; splitting SD files into MDL MOL files; -...


Platforms: Windows, Mac, *nix, Perl, BSD Solaris

Welcome to the SRMA home page. SRMA is a short read micro re-aligner for next-generation high throughput sequencing data. Sequence alignment algorithms examine each read independently. When indels occur towards the ends of reads, the alignment can lead to false SNPs as well as improperly placed...


Platforms: Mac

CILib comes from Computational Intelligence Library. CILib is a collaborative research framework for developing Computational Intelligence algorithms in the fields of swarm intelligence, evolutionary computing, neural networks, artificial immune systems, and fuzzy logic. Whats New in This...


Platforms: *nix

Geneious Basic is your personalized library of genomic and genetic data; that provides a fully integrated, visually advanced toolset for:Sequence alignment and phylogeneticsSequence analysisBLAST, Protein structure viewing, NCBI, EMBL, Pubmed auto-find & moreAPI for creating your own plugins...


Platforms: Mac

Geneious is a useful, unique and easy-to-use software system which has been designed to greatly speed up and simplify the research in molecular biology and biochemistry. Geneious is a cross-platform research engine for the retrieval, organization and analysis of biomolecular data that allows...


Platforms: Windows

Geneious is a useful, unique and easy-to-use software system which has been designed to greatly speed up and simplify the research in molecular biology and biochemistry. Geneious is a cross-platform research engine for the retrieval, organization and analysis of biomolecular data that allows...


Platforms: Windows

3D Genome Tuner draws circular genome map and enables viewing multi-genomes in 3D context. It also provides genome analysis and sequence alignment, making it a powerful tool in genome studies and demonstrations.


Platforms: Windows, Mac, Linux

LSC Editor is designed to be a graphical editor and code generator for Live Sequence Charts (LSCs). The code generated follows a simple execution mechanism. It shows a possible execution path. for WindowsAll


Platforms: Windows

Hebrew Editor is a tool that allows Hebrew-speaking users to create and edit Hebrew/English LaTeX documents. This package provides a text (terminal) based word processor which is extremely LaTeX-oriented. The editor also provides on-the-fly spell checking, multiple file editing, unlimited undo...


Platforms: *nix

The STed is the high-performance MIDI sequence editor / Music composer system. It had been working on X680x0 old Japanese personal workstation. The STed was originally developed by Mr. Takayuki "TURBO" Toda. Through many volunteers good office the source code of the STed has been opened. Since...


Platforms: *nix

When it comes to video editing nobody wants to spend hours mastering nuances of video cutting techniques. All we usually need is to place several pieces together, add some fade-ins and outs, include subtitles and do this with as little effort as possible. At the same time nobody wants to...


Platforms: Windows, Windows 7

This smart video editor can help you join multiple video files into a new one, split one file into several segments, or merge your favorite video segments which are cut from one video to a new one easily and fast.It allows you to edit video files in various formats like AVI, MPEG, H.264, SWF,...


Platforms: Windows, Other

Violet is a UML editor with these benefits: - Very easy to learn and use. - Draws nice-looking diagrams. - Completely free. - Cross-platform. Violet is intended for developers, students, teachers, and authors who need to produce simple UML diagrams quickly.It draws nice-looking - use case...


Platforms: Windows, Java,

Hebrew Editor is a tool that allows Hebrew-speaking users to create and edit Hebrew/English LaTeX documents. This package provides a text (terminal) based word processor which is extremely LaTeX-oriented. The editor also provides on-the-fly spell checking, multiple file editing, unlimited undo...


Platforms: *nix, C/C++, BSD

Moxiecode Content Editor offers a unique possibility to easily manage website contents without the need for traditional web development skills.This is accomplished through a simple three step process. The three steps are: - 1. Login Authenticate authors through a simple login. - 2. Browse...


Platforms: Windows, Mac, *nix, JavaScript, BSD Solaris

KiXscripts Editor is A feature-rich script editor designed for KiXtart. It provides Intellisense, Word Completion, Syntax Highlighting and Wizards for reference-intensive commands like "messagebox".


Platforms: Windows