Biochemistry Kinetics Experiments

The Fermi-Pasta-Ulam (FPU) problem is named after the numerical experiments first performed by Enrico Fermi, John Pasta, and Stanislaw Ulam in the summer of 1953 on the Los Alamos MANIAC computer, one of the first electronic computers. They wanted to understand how a one-dimensional crystal...

Here you will find a set of Java applications I have developed over time. Most (if not all) are experiments with Java.

NEOrg is a wiki to organize your experimental data. NEOrg provides two features: 1. Special directives. A directive is a general reST block markup. With the special directives defined by NEOrg, you can fetch data and images, show them effectively, and organize your notes. 2. Template page....


Platforms: *nix

Open2Dprot is an open-source proteomics project for the development of bioinformatic tools for n-dimensional protein expression data analysis of quantified protein expression across multiple samples from research experiments.


Platforms: *nix

The BlockCanvas project provides a visual environment for creating simulation experiments, where function and data are separated. Thus, you can define your simulation algorithm by visually connecting function blocks into a data flow network, and then run it with various data sets (known as...


Platforms: *nix

Metaboflux is a generic approach for predicting flux distribution in metabolic networks under multiple and various constraints deducted from the experiments, to increase the biological relevance of the model. Features . Muti-objective and multi-criteria analysis . Flux analysis ....


Platforms: *nix

ByoDyn (http://cbbl.imim.es/ByoDyn) is a software tool for the study of biochemical networks within the framework of systems biology. SBML compatible, ByoDyn is a group effort of the Computational Biochemistry and Biophysics Lab.


Platforms: *nix

CB-Commander is a plugin based tool that tries to integrate high throughput sequencing algorithms. It allows researchers to design and execute their experiments through a user friendly interface.


Platforms: *nix

Solvere4D is a powerful, open-source, freely available post-processor that makes it easy for anyone to generate 3D animations of 3D rigid body kinematics and kinetics, with many visualization options.


Platforms: *nix

NetEmul is a program for simulating computer networks. It makes possible to build, configure networks and verify its availability. This program allows beginners to see a principles of operation CN and gives a scope for experiments.


Platforms: *nix

A toolkit for the simulation of the passage of particles through matter. Geant4 project is a toolkit for the simulation of the passage of particles through matter. Its application areas include high energy physics and nuclear experiments, medical, accelerator and space physics studies.


Platforms: *nix

Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas.


Platforms: *nix

ORSEE is a web-based Online Recruitment System, specifically designed for organizing economic experiments. It's key features are: multiple experimenter/laboratory/subjectpool/experiment classes/language support, attribute query selection, random recruitment, public and internal experiment...


Platforms: *nix

MPIRuby is a Ruby version of the MPI supercomputing standard interface. It enables massively parallel and distributed algorithms to be written in a platform-independent manner suitable for large-scale computation-intensive experiments. MPI is the "Mes


Platforms: *nix

Data Pilot expands data analysis options available in Microsoft Excel with nonparametric statistical methods. The methods used in Data Pilot provides the most relevant results even with small numbers of samples, without any assumptions on distribution of the original sample. This is especially...


Platforms: Windows

Two Channels Frequency Generator allows independent control of frequency, phase and volume on left and right channels. Measured data points can be easily captured to data table for storage and later statistical analysis. The generator is the perfect tool for psychophysics and psycho-acoustics...


Platforms: Windows

Welcome to Reeko's Mad Scientist Lab! Your source of free science experiments for parents, teachers, and children of all ages. Kick off your shoes, pull up a chair, make yourself comfortable, Oh yeah! did we mention that protective goggles are required? As you'll soon find out - nothing is...


Platforms: ALL

UNU.RAN (Universal Non-Uniform RAndom Number generator) is a collection of algorithms for generating non-uniform pseudo-random variates as a library of C functions designed and implemented by the ARVAG (Automatic Random VAriate Generation) project group in Vienna, and released under the GNU...


Platforms: Windows, *nix

EasyCFD is a software application for the numerical simulation in 2D of fluid dynamics, on a cartesian coordinate system.Via EasyCFD you can do simulations nusing all types of fluids: rolling or turbulent fluids, isothermic or non-isothermic fluids, and also analyze stable states and transitory...


Platforms: Windows

Unrawel project is the library and simple command-line front-end that were written to experiment with different techniques for digital camera acquired images interpolation and processing. Areas which are covered include RAW images interpolation, images de-noising and enhancing, white balance...


Platforms: *nix