Biochemical Continuum

A 2D, top-down multiplayer online shooter game, based on SubSpace/Continuum. Warrior will take the idea of SubSpace but add a large number of new features to extend the possibilities in game play.

Force Field X is a group of open source (GPL v. 3), platform independent (Java Runtime Environment) modules for molecular biophysics. Key methods include: Polarizable AMOEBA force fields Particle-mesh Ewald electrostatics Generalized Kirkwood continuum electrostatics X-ray and neutron...

The OpenFOAM comes from Open Field Operation and Manipulation, and can simulate anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics, electromagnetics and the pricing of financial options. The core technology of OpenFOAM is a flexible...


Platforms: *nix

LAMMPS project is a Molecular Dynamics Simulator. LAMMPS has potentials for soft materials (biomolecules, polymers) and solid-state materials (metals, semiconductors) and coarse-grain systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the mesoscale...


Platforms: *nix

Uridium meets Xevious in this fast-paced retro shooter. Only 20 minutes remain before nuclear Armageddon, and it is up to you and your acrobatic silver space craft to save the day! Akasa steps back in time by rendering 3d objects in a limited palette of bright colours to reproduce the 'feel' of...


Platforms: Windows

CMISS is a mathematical modelling environment that allows the application of finite element analysis, boundary element and collocation techniques to a variety of complex bioengineering problems. It consists of a number of modules including a graphical front end with advanced 3D display and...


Platforms: Windows

PyBact is a Python written program designed for bacterial identification. The software generates simulated data matrix which accurately represents the probabilistic positive/negative results of the tested biochemical test


Platforms: Windows

APBS was designed as a software package for modeling biomolecular solvation through solution of the Poisson-Boltzmann equation or PBE. PBE is one of the most popular continuum models for describing electrostatic interactions between molecular solutes in salty, aqueous media. Continuum...


Platforms: Windows

JCruiseMonitor monitors the state of builds on your team's continuous integration server (Hudson, CruiseControl/.NET/.rb, Continuum or Bamboo), providing feedback through a set of devices including a tray icon, USB light and audible warnings.


Platforms: Windows

ByoDyn (http://cbbl.imim.es/ByoDyn) is a software tool for the study of biochemical networks within the framework of systems biology. SBML compatible, ByoDyn is a group effort of the Computational Biochemistry and Biophysics Lab.


Platforms: Mac, Linux

HalX is a LIMS (Laboratory Information Management System). It is meant to be able to keep track of all the experimental details of any type of biochemical, molecular biology or structural biology experiment (but not all are available now...)


Platforms: Windows, Mac, Linux

QDC (quick direct-method controlled) is an optimized exact implementation of the Gillespie's direct-method. It is designed for biochemical simulations when there is the need of dynamic parameters whose values can change during the simulation.


Platforms: Windows, Mac, BSD, Linux

MetMAP is a MATLAB Toolbox for Metabolical Modeling, Analysis and oPtimization (Met. M. A. P.).You can use this package to study metabolical systems from a theoretical point of view, analysing the pathway's structure and dynamics, but you can also use it for biotechnological purposes, evaluating...


Platforms: Matlab

ByoDyn (http://cbbl.imim.es/ByoDyn) is a software tool for the study of biochemical networks within the framework of systems biology. SBML compatible, ByoDyn is a group effort of the Computational Biochemistry and Biophysics Lab.


Platforms: *nix