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Bio::Tree::DistanceFactory is a Perl module to construct a tree using distance based methods. SYNOPSIS use Bio::Tree::DistanceFactory; use Bio::AlignIO; use Bio::Align::DNAStatistics; my $tfactory = Bio::Tree::DistanceFactory->new(-method => "NJ"); my $stats =...

Bio::Tree::Compatible is a Perl module for testing compatibility of phylogenetic trees with nested taxa. SYNOPSIS use Bio::Tree::Compatible; use Bio::TreeIO; my $input = new Bio::TreeIO(-format => newick, -file => input.tre); my $t1 = $input->next_tree; my $t2 = $input->next_tree; my...

Bio::Graphics::Panel is a Perl module to generate GD images of Bio::Seq objects. SYNOPSIS # This script parses a GenBank or EMBL file named on the command # line and produces a PNG rendering of it. Call it like this: # render.pl my_file.embl | display - use strict; use Bio::Graphics;...


Platforms: *nix

Bio::Tree::NodeNHX is a Simple Tree Node with support for NHX tags. SYNOPSIS use Bio::Tree::NodeNHX; my $nodeA = new Bio::Tree::NodeNHX(); my $nodeL = new Bio::Tree::NodeNHX(); my $nodeR = new Bio::Tree::NodeNHX(); my $node = new Bio::Tree::NodeNHX(); $node->add_Descendents($nodeL);...


Platforms: *nix

Bio::Tree::Tree is an implementation of TreeI interface. SYNOPSIS # like from a TreeIO my $treeio = new Bio::TreeIO(-format => newick, -file => treefile.dnd); my $tree = $treeio->next_tree; my @nodes = $tree->get_nodes; my $root = $tree->get_root_node; This object holds handles to Nodes...


Platforms: *nix

GeoServer project is a full transactional Java (J2EE) implementation of the OpenGIS Consortiums Web Feature Server specification, with an integrated WMS. GeoServer is free software, available under the GPL 2.0 license. Users who would like to access and modify their geographic data over the...


Platforms: *nix

Bio::Graph::SimpleGraph is a Perl module that can create and manipulate undirected graphs. SYNOPSIS use Bio::Graph::SimpleGraph; my $graph=new SimpleGraph; # read pairs of nodes from STDIN while (<>) { my($node1,$node2)=split; $graph->add_edge($node1,$node2); } my @nodes=graph->nodes;...


Platforms: *nix

Lunar is a source based Linux distribution developed by a talented team of programmers from all over the world, working together to extend the Linux technology into better-tailored and more optimized software for the end user. Lunar uses and builds upon the Linux kernel, the software started by...


Platforms: *nix

WikyBlog is a Bliki CMS (blog + wiki) written in PHP/MySQL. WikyBlog has a MediaWiki derived syntax, is AJAX-enhanced, supports UTF-8, and is extendable (e.g. Google maps). Whats New in 1.4.15 Stable Release: - The changes in this version are all intended to improve the applications...


Platforms: *nix

Plait (pronounced "play") is a new way to find and play music from the command line. Plait understands brief, easy to type queries that pick a single song, mix queries that combine works from multiple artists, and stream queries that find Shoutcast radio streams. A variety of filters are...


Platforms: *nix

The Python logging module implements a standard logging system for Python programs. It was strongly influenced by log4j from the Apache project. As this package is included in versions 2.3 and later, only users of earlier versions of Python would need to install this module. There was a need...


Platforms: *nix

About PiquantMenu Differentiate five parts on PiquantMenu : Original Applications Menu for access applications. Menu divide Apple applications and non AppleApplications, don t add launched applications and don t show folder for minumum items. Files browser for fast access form menu bar. Function...


Platforms: Mac

IKEv2 provides an implementation of the Internet Key Exchange protocol version 2. IKEv2 is an implementation of the Internet Key Exchange protocol version 2. It is still in development, and currently targeted/developed on Fedora Core 3. Other Unix-like operating system are left for a later...


Platforms: *nix

Hammer of Thyrion is a port of Ravens Hexen2 source code and is based on the original Linux Hexen II project, Anvil of Thyrion. HoT includes many bugfixes, improved sound and video modes, opengl improvements and documentation among many others. Whats New in This Release: General: --------...


Platforms: *nix

Plone Blog provides an improved blogging tool for Plone based on refactored SimplBlog product. Plone Blog (qPloneBlog) based on SimpleBlog product. It is enhanced with ping abilities, RSS2 support altogether with audio and video enclosures, Technorati tags, TrackBacks. qPloneBlog bundle...


Platforms: *nix

CosmoPBX project is Linux live CD based on Knoppix Linux. CosmoPBX is released as open source under the GNU General Public License (GPL) and is available for download free of charge. With CosmoPBX, it is possible to get a PBX system up and running within 2 minutes without installing anything!...


Platforms: *nix

YaKuake is Yet Another Kuake KDE terminal emulator.. Download KDE-Apps.org Community Portal for KDE Applications Software Office Multimedia Graphic Network Printing Education Games Development Administration Scientific Security Utilities Screensaver News Forum GUI Polls Links Downloads QT Look...


Platforms: *nix

Quake 4 Patch for Linux Full Install is a FPS game. This update replaces the 1.1 patch released several weeks ago, and includes all of the changes outlined for that update, including: a fixed pure server system, a new AddonPak autodownloading system, voice chat in multiplayer, a forcemodel...


Platforms: *nix

BumpRace project is a simple 1 or 2 player racing maze game. BumpRace is a simple arcade game. Youve to get from the start to the finish line without crashing into deadly blocks. This game has really simple rules!.


Platforms: *nix

PPhone project is a universal communication client for IP telephony and instant messaging. The applications design is modular, so GUI, protocol, codec, and sound drivers have plugin interfaces, the GUI is detachable, and you can switch among different GUI implementations and change the clients...


Platforms: *nix