Bio To Bin
Bio::Network::IO::dip_tab is a Perl class for parsing interaction data in DIP tab-delimited format. SYNOPSIS Do not use this module directly, use Bio::Network::IO. For example: my $io = Bio::Network::IO->new(-format => dip_tab, -file => data.dip); my $network = $io->next_network; The...
Platforms: *nix
License: Freeware | Size: 99.33 KB | Download (90): Bio::Network::IO::dip_tab Download |
Bio::Phylo::Treedrawer::Svg is a Perl module that creates svg tree drawings. No serviceable parts inside. This module creates a scalable vector graphic from a Bio::Phylo::Trees::Tree object. It is called by the Bio::Phylo::Treedrawer object, so look there to learn how to create tree drawings....
Platforms: *nix
License: Freeware | Size: 102.4 KB | Download (89): Bio::Phylo::Treedrawer::Svg Download |
Bio::Phylo::IO Perl module contains input and output of phylogenetic data. SYNOPSIS use Bio::Phylo::IO; # parsing a tree from a newick string my $tree_string = (((A,B),C),D);; my $tree = Bio::Phylo::IO->parse( -string => $tree_string, # old parser, always adds node labels -format =>...
Platforms: *nix
License: Freeware | Size: 143.36 KB | Download (91): Bio::Phylo::IO 0.17 Download |
Bio::SAGE::Comparison module compares data from serial analysis of gene expression (SAGE) libraries. SYNOPSIS use Bio::SAGE::Comparison; $sage = Bio::SAGE::Comparison->new(); This module provides several tools for comparing data generated from serial analysis of gene expression (SAGE)...
Platforms: *nix
License: Freeware | Size: 8.19 KB | Download (104): Bio::SAGE::Comparison Download |
Bio::SAGE::DataProcessing module processes raw serial analysis of gene expression (SAGE) data. SYNOPSIS use Bio::SAGE::DataProcessing; $sage = Bio::SAGE::DataProcessing->new(); # open sequence and quality files open( READS, "library.fasta" ); open( QUAL, "library.qual.fasta" ); #...
Platforms: *nix
License: Freeware | Size: 19.46 KB | Download (92): Bio::SAGE::DataProcessing Download |
Bio::ClusterI module is a cluster Perl interface. SYNOPSIS # see the implementations of this interface for details but # basically my $cluster= $cluster->new(-description=>"POLYUBIQUITIN", -members =>[$seq1,$seq2]); my @members = $cluster->get_members(); my @sub_members =...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (87): Bio::ClusterI Download |
Bio::Matrix::PSM::InstanceSite is a PSM site occurance. SYNOPSIS use Bio::Matrix::PSM::InstanceSite; #You can get an InstanceSite object either from a file: my ($instances,$matrix)=$SomePSMFile->parse_next; #or from memory my %params=(seq=>TATAAT, id=>"TATAbox1",...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (109): Bio::Matrix::PSM::InstanceSite Download |
Bio::NEXUS::MatrixBlock is a Perl module that provides functions for handling blocks that have matrices. SYNOPSIS This module is the super class of Characters, Unaligned, and Distances block classes, and indirectly it is a super-class of Data and History blocks, which are both sub-classes of...
Platforms: *nix
License: Freeware | Size: 153.6 KB | Download (86): Bio::NEXUS::MatrixBlock Download |
Bio::NEXUS::DataBlock is a Perl module that represents the deprecated DATA Block in NEXUS file. SYNOPSIS $block_object = new Bio::NEXUS::DataBlock($type, $block, $verbose, $taxlabels_ref); The DataBlock class represents the deprecated Data Block in a NEXUS file. Data Blocks are still used...
Platforms: *nix
License: Freeware | Size: 153.6 KB | Download (104): Bio::NEXUS::DataBlock Download |
Bio::NEXUS::UnalignedBlock is a Perl module that represents an UNALIGNED block of a NEXUS file. SYNOPSIS if ( $type =~ /unaligned/i ) { $block_object = new Bio::NEXUS::UnalignedBlock($type, $block, $verbose); } This is a class representing an unaligned block in NEXUS file METHODS new...
Platforms: *nix
License: Freeware | Size: 153.6 KB | Download (85): Bio::NEXUS::UnalignedBlock Download |
Bio::NEXUS::SetsBlock is a Perl module that represents SETS block of a NEXUS file. SYNOPSIS $block_object = new Bio::NEXUS::SetsBlock($block_type, $block, $verbose); Parses Sets block of NEXUS file and stores Sets data. METHODS new Title : new Usage : $block_object = new...
Platforms: *nix
License: Freeware | Size: 153.6 KB | Download (87): Bio::NEXUS::SetsBlock Download |
Bio::GMOD is a unified API for Model Organism Databases. SYNOPSIS Check the installed version of a MOD use Bio::GMOD::Util::CheckVersions.pm my $mod = Bio::GMOD::Util::CheckVersions->new(-mod=>WormBase); my $version = $mod->live_version; Update a MOD installation use Bio::GMOD::Update;...
Platforms: *nix
License: Freeware | Size: 71.68 KB | Download (97): Bio::GMOD Download |
Bio::NEXUS::DistancesBlock is a Perl module that represents DISTANCES block in NEXUS file. The DistancesBlock class represents a NEXUS Distances Block and provides methods for reading, writing, and accessing data within these blocks. Distances Blocks contain distance matrices, or a table of...
Platforms: *nix
License: Freeware | Size: 153.6 KB | Download (90): Bio::NEXUS::DistancesBlock Download |
Bio::SeqIO::fastq is a fastq sequence input/output stream. SYNOPSIS Do not use this module directly. Use it via the Bio::SeqIO class. This object can transform Bio::Seq and Bio::Seq::SeqWithQuality objects to and from fastq flat file databases. Fastq is a file format used frequently at...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (104): Bio::SeqIO::fastq Download |
ISOBuddy is a very user friendly ISO image file processing tool that can convert almost any image file format to ISO.
ISOBuddy with its power to convert GI, NRG, CDI, MDF, IMG, B5I, B6I, DMG, PDI, BIN and CCD to ISO image, erase CD/DVD and burn ISO image files to CD/DVD places DVD-Ranger...
Platforms: Windows
License: Freeware | Size: 3.23 MB | Download (1872): ISOBuddy Download |
Bio-Formats was specially designed as an accessible Java-based tool that can be used for reading and writing life sciences image file formats.
It is capable of parsing both pixels and metadata for a large number of formats, as well as writing to several formats.
Platforms: Windows
License: Freeware | Download (48): Bio-Formats Download |
Send To Toys is an enhancement of the Send To system menu.
- Send To Toys Control Panel Applet allows you to manage the Send To system menu content, and configure the various Send To Toys settings.
- "Add to Send To menu" and "Remove from Send To menu" allows you to personalize the Send To...
Platforms: Windows
License: Freeware | Size: 921.6 KB | Download (413): Send To Toys Download |
Features - Listing profiles by role - Restricting access to profiles by both who is viewing the profile and who owns the profileInstallation - Unpack in your modules folder (usually /sites/all/modules/) and enable under Administer > Site Building > Modules. Requirements: - Drupal 5.x - Drupal...
Platforms: Windows, Mac, *nix, PHP, BSD Solaris
License: Freeware | Download (49): Bio role terms Download |
Any node-type can be assigned as the bio or Bio module can provide its own node type. The bio can display on the users' profile pages and/or it can add "View [username]'s [Bio]" links to nodes.Installation - Unpack in your modules folder (usually /sites/all/modules/) and enable under Administer >...
Platforms: Windows, Mac, *nix, PHP, BSD Solaris
License: Freeware | Download (51): Bio Jeff Robbins Download |
Converts any Q15 value (hexadecimal or binary) to decimal integer.y = q152dec(x , form)Input arguments of function:x - its hexadecimal or binary representation stored in a MATLAB stringform - dependent on representation of input argument (hexadecimal or binary) take 'hex' or 'bin'Valu of...
Platforms: Matlab
License: Freeware | Size: 10 KB | Download (45): Q15 to decimal converter Download |