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Bio To Bin

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Added: August 01, 2010 | Visits: 926

Bio::Network::IO::dip_tab Bio::Network::IO::dip_tab is a Perl class for parsing interaction data in DIP tab-delimited format. SYNOPSIS Do not use this module directly, use Bio::Network::IO. For example: my $io = Bio::Network::IO->new(-format => dip_tab, -file => data.dip); my $network = $io->next_network; The...



Platforms: *nix

License: Freeware Size: 99.33 KB Download (90): Bio::Network::IO::dip_tab Download

Added: August 25, 2010 | Visits: 1.092

Bio::Phylo::Treedrawer::Svg Bio::Phylo::Treedrawer::Svg is a Perl module that creates svg tree drawings. No serviceable parts inside. This module creates a scalable vector graphic from a Bio::Phylo::Trees::Tree object. It is called by the Bio::Phylo::Treedrawer object, so look there to learn how to create tree drawings....





Platforms: *nix

License: Freeware Size: 102.4 KB Download (89): Bio::Phylo::Treedrawer::Svg Download

Added: June 19, 2010 | Visits: 696

Bio::Phylo::IO 0.17 Bio::Phylo::IO Perl module contains input and output of phylogenetic data. SYNOPSIS use Bio::Phylo::IO; # parsing a tree from a newick string my $tree_string = (((A,B),C),D);; my $tree = Bio::Phylo::IO->parse( -string => $tree_string, # old parser, always adds node labels -format =>...


Platforms: *nix

License: Freeware Size: 143.36 KB Download (91): Bio::Phylo::IO 0.17 Download

Added: May 09, 2010 | Visits: 1.119

Bio::SAGE::Comparison Bio::SAGE::Comparison module compares data from serial analysis of gene expression (SAGE) libraries. SYNOPSIS use Bio::SAGE::Comparison; $sage = Bio::SAGE::Comparison->new(); This module provides several tools for comparing data generated from serial analysis of gene expression (SAGE)...


Platforms: *nix

License: Freeware Size: 8.19 KB Download (104): Bio::SAGE::Comparison Download

Added: June 16, 2010 | Visits: 988

Bio::SAGE::DataProcessing Bio::SAGE::DataProcessing module processes raw serial analysis of gene expression (SAGE) data. SYNOPSIS use Bio::SAGE::DataProcessing; $sage = Bio::SAGE::DataProcessing->new(); # open sequence and quality files open( READS, "library.fasta" ); open( QUAL, "library.qual.fasta" ); #...


Platforms: *nix

License: Freeware Size: 19.46 KB Download (92): Bio::SAGE::DataProcessing Download

Added: October 06, 2010 | Visits: 673

Bio::ClusterI Bio::ClusterI module is a cluster Perl interface. SYNOPSIS # see the implementations of this interface for details but # basically my $cluster= $cluster->new(-description=>"POLYUBIQUITIN", -members =>[$seq1,$seq2]); my @members = $cluster->get_members(); my @sub_members =...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (87): Bio::ClusterI Download

Added: March 14, 2010 | Visits: 994

Bio::Matrix::PSM::InstanceSite Bio::Matrix::PSM::InstanceSite is a PSM site occurance. SYNOPSIS use Bio::Matrix::PSM::InstanceSite; #You can get an InstanceSite object either from a file: my ($instances,$matrix)=$SomePSMFile->parse_next; #or from memory my %params=(seq=>TATAAT, id=>"TATAbox1",...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (109): Bio::Matrix::PSM::InstanceSite Download

Added: February 09, 2010 | Visits: 797

Bio::NEXUS::MatrixBlock Bio::NEXUS::MatrixBlock is a Perl module that provides functions for handling blocks that have matrices. SYNOPSIS This module is the super class of Characters, Unaligned, and Distances block classes, and indirectly it is a super-class of Data and History blocks, which are both sub-classes of...


Platforms: *nix

License: Freeware Size: 153.6 KB Download (86): Bio::NEXUS::MatrixBlock Download

Added: February 24, 2010 | Visits: 843

Bio::NEXUS::DataBlock Bio::NEXUS::DataBlock is a Perl module that represents the deprecated DATA Block in NEXUS file. SYNOPSIS $block_object = new Bio::NEXUS::DataBlock($type, $block, $verbose, $taxlabels_ref); The DataBlock class represents the deprecated Data Block in a NEXUS file. Data Blocks are still used...


Platforms: *nix

License: Freeware Size: 153.6 KB Download (104): Bio::NEXUS::DataBlock Download

Added: October 22, 2010 | Visits: 838

Bio::NEXUS::UnalignedBlock Bio::NEXUS::UnalignedBlock is a Perl module that represents an UNALIGNED block of a NEXUS file. SYNOPSIS if ( $type =~ /unaligned/i ) { $block_object = new Bio::NEXUS::UnalignedBlock($type, $block, $verbose); } This is a class representing an unaligned block in NEXUS file METHODS new...


Platforms: *nix

License: Freeware Size: 153.6 KB Download (85): Bio::NEXUS::UnalignedBlock Download

Added: April 10, 2010 | Visits: 706

Bio::NEXUS::SetsBlock Bio::NEXUS::SetsBlock is a Perl module that represents SETS block of a NEXUS file. SYNOPSIS $block_object = new Bio::NEXUS::SetsBlock($block_type, $block, $verbose); Parses Sets block of NEXUS file and stores Sets data. METHODS new Title : new Usage : $block_object = new...


Platforms: *nix

License: Freeware Size: 153.6 KB Download (87): Bio::NEXUS::SetsBlock Download

Added: August 25, 2010 | Visits: 948

Bio::GMOD Bio::GMOD is a unified API for Model Organism Databases. SYNOPSIS Check the installed version of a MOD use Bio::GMOD::Util::CheckVersions.pm my $mod = Bio::GMOD::Util::CheckVersions->new(-mod=>WormBase); my $version = $mod->live_version; Update a MOD installation use Bio::GMOD::Update;...


Platforms: *nix

License: Freeware Size: 71.68 KB Download (97): Bio::GMOD Download

Added: July 08, 2010 | Visits: 900

Bio::NEXUS::DistancesBlock Bio::NEXUS::DistancesBlock is a Perl module that represents DISTANCES block in NEXUS file. The DistancesBlock class represents a NEXUS Distances Block and provides methods for reading, writing, and accessing data within these blocks. Distances Blocks contain distance matrices, or a table of...


Platforms: *nix

License: Freeware Size: 153.6 KB Download (90): Bio::NEXUS::DistancesBlock Download

Added: June 10, 2010 | Visits: 1.279

Bio::SeqIO::fastq Bio::SeqIO::fastq is a fastq sequence input/output stream. SYNOPSIS Do not use this module directly. Use it via the Bio::SeqIO class. This object can transform Bio::Seq and Bio::Seq::SeqWithQuality objects to and from fastq flat file databases. Fastq is a file format used frequently at...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (104): Bio::SeqIO::fastq Download

Released: April 14, 2011  |  Added: April 17, 2011 | Visits: 4.907

ISOBuddy ISOBuddy is a very user friendly ISO image file processing tool that can convert almost any image file format to ISO. ISOBuddy with its power to convert GI, NRG, CDI, MDF, IMG, B5I, B6I, DMG, PDI, BIN and CCD to ISO image, erase CD/DVD and burn ISO image files to CD/DVD places DVD-Ranger...


Platforms: Windows

License: Freeware Size: 3.23 MB Download (1872): ISOBuddy Download

Released: September 17, 2012  |  Added: September 17, 2012 | Visits: 505

Bio-Formats Bio-Formats was specially designed as an accessible Java-based tool that can be used for reading and writing life sciences image file formats. It is capable of parsing both pixels and metadata for a large number of formats, as well as writing to several formats.


Platforms: Windows

License: Freeware Download (48): Bio-Formats Download

Released: November 14, 2012  |  Added: November 14, 2012 | Visits: 560

Send To Toys Send To Toys is an enhancement of the Send To system menu. - Send To Toys Control Panel Applet allows you to manage the Send To system menu content, and configure the various Send To Toys settings. - "Add to Send To menu" and "Remove from Send To menu" allows you to personalize the Send To...


Platforms: Windows

License: Freeware Size: 921.6 KB Download (413): Send To Toys Download

Added: May 10, 2013 | Visits: 341

Bio role terms Features - Listing profiles by role - Restricting access to profiles by both who is viewing the profile and who owns the profileInstallation - Unpack in your modules folder (usually /sites/all/modules/) and enable under Administer > Site Building > Modules.  Requirements: - Drupal 5.x - Drupal...


Platforms: Windows, Mac, *nix, PHP, BSD Solaris

License: Freeware Download (49): Bio role terms Download

Added: May 10, 2013 | Visits: 426

Bio Jeff Robbins Any node-type can be assigned as the bio or Bio module can provide its own node type. The bio can display on the users' profile pages and/or it can add "View [username]'s [Bio]" links to nodes.Installation - Unpack in your modules folder (usually /sites/all/modules/) and enable under Administer >...


Platforms: Windows, Mac, *nix, PHP, BSD Solaris

License: Freeware Download (51): Bio Jeff Robbins Download

Added: May 13, 2013 | Visits: 560

Q15 to decimal converter Converts any Q15 value (hexadecimal or binary) to decimal integer.y = q152dec(x , form)Input arguments of function:x - its hexadecimal or binary representation stored in a MATLAB stringform - dependent on representation of input argument (hexadecimal or binary) take 'hex' or 'bin'Valu of...


Platforms: Matlab

License: Freeware Size: 10 KB Download (45): Q15 to decimal converter Download

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