Bio Plotter Software

Bio::DB::Flat::BDB::swissprot is a swissprot adaptor for Open-bio standard BDB-indexed flat file. SYNOPSIS See Bio::DB::Flat. This module allows swissprot files to be stored in Berkeley DB flat files using the Open-Bio standard BDB-indexed flat file scheme. You should not be using this...

Bio::Graphics::Glyph::minmax is the minmax glyph. SYNOPSIS See L< Bio::Graphics::Panel > and L< Bio::Graphics::Glyph >. This glyph is the common base class for Bio::Graphics::Glyph::graded_segments and Bio::Graphics::Glyph::xyplot. It adds an internal method named minmax() for calculating...

Bio::Graphics::FeatureFile is a set of Bio::Graphics features, stored in a file. SYNOPSIS use Bio::Graphics::FeatureFile; my $data = Bio::Graphics::FeatureFile->new(-file => features.txt); # create a new panel and render contents of the file onto it my $panel = $data->new_panel; my...


Platforms: *nix

Bio::DB::GFF::Feature is a relative segment identified by a feature type. Bio::DB::GFF::Feature is a stretch of sequence that corresponding to a single annotation in a GFF database. It inherits from Bio::DB::GFF::RelSegment, and so has all the support for relative addressing of this class and...


Platforms: *nix

Software::Packager::Svr4 is the Software::Packager extension for System VR4 packages. SYNOPSIS use Software::Packager; my $packager = new Software::Packager(svr4); This module is used to create software packages in a format suitable for installation with pkgadd. FUNCTIONS new() This...


Platforms: *nix

Bio::Biblio is a Bibliographic Query Service module. SYNOPSIS use Bio::Biblio; my $biblio = new Bio::Biblio; print $biblio->find (perl)->get_count . "n"; my $collection = $biblio->find (brazma, authors); while ( $collection->has_next ) { print $collection->get_next; } #The new()...


Platforms: *nix

Bio::Graph::SimpleGraph is a Perl module that can create and manipulate undirected graphs. SYNOPSIS use Bio::Graph::SimpleGraph; my $graph=new SimpleGraph; # read pairs of nodes from STDIN while (<>) { my($node1,$node2)=split; $graph->add_edge($node1,$node2); } my @nodes=graph->nodes;...


Platforms: *nix

Bio::ConnectDots::SimpleGraph is a simple, hopefully fast undirected graph package. SYNOPSIS use SimpleGraph; my $graph=new Bio::ConnectDots::SimpleGraph; # read pairs of nodes from STDIN while (<>) { my($node1,$node2)=split; $graph->add_edge($node1,$node2); } my @nodes=graph->nodes;...


Platforms: *nix

Bio::Affymetrix::CDF is a Perl module to parse Affymetrix CDF files. SYNOPSIS use Bio::Affymetrix::CDF; # Parse the CDF file my $cdf=new Bio::Affymetrix::CDF({"probemode"=>0}); $cdf->parse_from_file("foo.cdf"); # Find some fun facts about this chip type print...


Platforms: *nix

Score Cluster System Software is a cluster system software is designed for the high performance cluster environment without using the TCP/IP protocol stack. Score Cluster System Software features high performance communication, efficient computer management and single-system image, higher...


Platforms: *nix

Bio::AlignIO::bl2seq is a bl2seq sequence input/output stream. SYNOPSIS Do not use this module directly. Use it via the Bio::AlignIO class, as in: use Bio::AlignIO; $in = Bio::AlignIO->new(-file => "inputfilename" , -format => bl2seq); $aln = $in->next_aln(); This object can create...


Platforms: *nix

Bio::AlignIO::msf is a Perl module with msf sequence input/output stream. SYNOPSIS Do not use this module directly. Use it via the Bio::AlignIO class. This object can transform Bio::Align::AlignI objects to and from msf flat file databases. The rest of the documentation details each of...


Platforms: *nix

Open RObot COntrol Software (Orocos) framework applies software patterns in C++ to achieve real-time execution of software components and provides an infrastructure to quickly integrate them in a real-time operating system such as RTAI or RTLinux, although it can be tested on normal Linux...


Platforms: *nix

Software::Packager::Rpm is a suite of Perl modules providing a common interface for the creation of platform specific software installation packagers. add_item() my %object_data = ( SOURCE => /source/file1, TYPE => file, KIND => doc, DESTINATION => /usr/local/file1, USER => joe, GROUP...


Platforms: *nix

Software::Packager is a suite of Perl modules providing a common interface for the creation of platform specific software installation packagers. INSTALLATION Software::Packager uses the standard perl module install process perl Makefile.PL make make test (optional but recommended) make...


Platforms: *nix

Software::Packager::Tar is used to create tar files with the required structure as specified by the list of object added to the packager. SYNOPSIS use Software::Packager; my $packager = new Software::Packager(tar); FUNCTIONS new() This method creates and returns a new class object....


Platforms: *nix

Software::Packager::Object is a generic object data storage. SYNOPSIS use Software::Packager::Object; This module is used by Software::Packager for holding data for a each item added to the a software package. It provides an easy way of accessing the data for each object to be installed....


Platforms: *nix

Software::Packager::Object::Aix module it extends Software::Packager::Object and adds extra methods for use by the AIX software packager. FUNCTIONS LPP TYPE The LPP type for objects determines the type of LPP package created. If the objects destination is under /usr/share then the object is...


Platforms: *nix

Software::Packager::Solaris is the Software::Packager extension for Solaris 2.5.1 and above. SYNOPSIS use Software::Packager; my $packager = new Software::Packager(solaris); This module is used to create software packages in a format suitable for installation with pkgadd. The process of...


Platforms: *nix

Software::Packager::Aix is the Software::Packager extension for AIX 4.1 and above. SYNOPSIS use Software::Packager; my $packager = new Software::Packager(aix); This module is used to create software packages in a Backup-format file (bff) suitable for installation with installp. This...


Platforms: *nix