Analyze Membrane Proteins

MPEx is a small, easy to use application designed to help you explore the topology and other features of membrane proteins by means of hydropathy plots based upon thermodynamic and biological principles. The program is based on sliding-window analysis that represents an amino acid sequence as a... Platforms: Windows

Swiss-PdbViewer (aka DeepView) is an application that provides a user friendly interface allowing to analyze several proteins at the same time. The proteins can be superimposed in order to deduce structural alignments and compare their active sites or any other relevant parts. Amino acid... Platforms: Mac

Object Relational Membrane is a Python package that provides the functionality of an object relational layer like EJB or other persistence storage systems. Object Relational Membrane is a thin compatibility layer between SQL table layouts and Object Oriented Python. While providing a good deal... Platforms: *nix

xor-analyze provides a program for cryptanalyzing xor "encryption" with variable key length.. Thomas Habets useful programs Platforms: *nix

These tools read and visualize Analyze MRI data files (.hdr, .img). Further work will create functions to write files. See http://eeg.sourceforge.net/ for more information and regular updates. Platforms: Matlab

Insert channels in a membrane and see what happens. See how different types of channels allow particles to move through the membrane. Sample Learning Goals * Predict when particles will move through the membrane and when they will not. * Identify which particle type will diffuse depending on... Platforms: Mac

The Circular Membrane Modes model displays the analytical wave equation solution for an ideal circular membrane with a fixed boundary. The solution is described by two integers m and n where n is a positive integer that counts the number of radial nodes and m counts the number of azimuthal... Platforms: Mac

Please always check http://www.rotman-baycrest.on.ca/~jimmy/NIfTI for detail descriptions and latest updates.If you are confused by the Left / Right of an ANALYZE image, you can consult http://www.rotman-baycrest.on.ca/~jimmy/UseANALYZE.htmYou may also want to read... Platforms: Matlab

The purpose of this program is to simulate the permeation time lag in a polymer hollow fiber membrane with a dual mode sorption isotherm and the partially immobilized diffusion model.The program plot the 3D time lag with two models:1) concentration gradient as the driving force for diffusion2)... Platforms: Matlab

BrainMaps Analyze is a powerful tool for applying image analysis routines to massive, high resolution brain image data at BrainMaps.org (or elsewhere)The thumbnail image is a screenshot of BrainMaps Analyze (Matlab version) performing granulometry analysis on this image. The top left image is a... Platforms: Matlab

View, Edit and Analyze Hexadecimal Data and Binary Files of any Size. Free Hex Editor Neo is a large files optimized freeware hex editor for everyone who works with ASCII, hex, decimal, float, double and binary data. Make patches with just two mouse clicks, manipulate your EXE, DLL, DAT, AVI,... Platforms: Windows

WikSpeak is a tool that allows non-native English speakers to analyze the correlation between the pronunciation and spelling of English words. This program is a simple and fast graphic interface which can retrieve the phonetic transcription ( IPA ) and the pronunciation of any English word, while... Platforms: *nix

rpm-analyzer is a graphical tool to help you analyze rpm dependencies. You can easily see what packages are required to install or remove a specific rpm. RPM-Analyzer project may also help you to maintain a Red Hat-based distribution by providing hdlist and comps.xml analysis tools.. RPM... Platforms: *nix

Bio::Tools::Run::TribeMCL is a method for clustering proteins into related groups, which are termed protein families. SYNOPSIS use Bio::Tools::Run::TribeMCL; use Bio::SearchIO; # 3 methods to input the blast results # straight forward raw blast output (NCBI or WU-BLAST) my @params =... Platforms: *nix

Shade is an acronym which stands for Steganographically Hide and Analyze Data Entries. Shade LSB project is a versatile and feature-rich program designed to analyze and manipulate LSBs (least significant bits) of files, attempting to either hide or pluck out data. LSB manipulation is a form of... Platforms: *nix

freq is a Perl script used to analyze the last log. It works on Linux systems, but may also work on other UNIX-based systems that have the same format for their lastlog. I have added some preliminary support for SunOS and IRIX, though this has not been tested to the point where I would know if... Platforms: *nix

nmr-relax is designed for the study of the dynamics of proteins or other macromolecules though the analysis of NMR relaxation data. It is a community driven project created by NMR spectroscopists for NMR spectroscopists. It supports exponential curve fitting for the calculation of the R1 and R2... Platforms: *nix

Here is the description you can find at Freshmeat: Gujin is a PC boot loader which can analyze your partitions and filesystems. It finds the Linux kernel images available, as well as other bootable partitions (for *BSD, MS-DOS, Windows, etc.), files (*.kgz) and bootable disk images (*.bdi), and... Platforms: *nix

MySQA program is a useful program to analyze log files created by MySQL slow queries or queries that dont use indexes. About MySQL: MySQL is a multithreaded, multi-user, SQL (Structured Query Language) Database Management System (DBMS) with an estimated six million installations. MySQL AB... Platforms: *nix

Net::Traces::SSFNet is a Perl module to analyze traces generated by SSFNet. SYNOPSIS use Net::Traces::SSFNet qw( droptail_record_player droptail_record_plotter ); $Net::Traces::SSFNet::PRINT_EXACT_DECIMAL_DIGITS = 0; $Net::Traces::SSFNet::SHOW_SOURCES = 1; $Net::Traces::SSFNet::SHOW_STATS... Platforms: *nix