Analyze Data Sets

The MIPAV (Medical Image Processing, Analysis, and Visualization) application enables quantitative analysis and visualization of medical images of numerous modalities such as PET, MRI, CT, or microscopy. Using MIPAV's standard user-interface and analysis tools, researchers at remote sites (via...

Obtain data from images of graphs scanned from articles or available as image. Import the graph into ScanIt from a scanner or file, or from the clipboard. Define locations of the graph's axes by indicating known points. Extract data from the graph by manually picking points, by scanning for...

openDICOM.NET software implements a new approach towards DICOM (Digital Imaging and Communications in Medicine) libraries. DICOM is a worldwide standard in Medical IT and is provided by the National Electrical Manufacturers Assocation (NEMA). This standard specifies the way medical images and...


Platforms: *nix

PDL::Impatient is a PDL for the impatient. SYNOPSIS A brief summary of the main PDL features and how to use them. Perl is an extremely good and versatile scripting language, well suited to beginners and allows rapid prototyping. However until recently it did not support data structures...


Platforms: *nix

GD::Graph is a graph plotting module for Perl 5. SYNOPSIS use GD::Graph::moduleName; GD::Graph is a perl5 module to create charts using the GD module. The following classes for graphs with axes are defined: GD::Graph::lines Create a line chart. GD::Graph::bars and GD::Graph::hbars...


Platforms: *nix

flow-tools is a set of programs for processing and managing NetFlow exports from Cisco and Juniper routers. The tools included are: flow-capture, flow-cat, flow-dscan, flow-expire, flow-export, flow-fanout, flow-filter, flow-gen, flow-header, flow-import, flow-mask, flow-merge, flow-nfilter,...


Platforms: *nix

ObjStore::Internals is a Perl module with a few notes on the implementation. SYNOPSIS You dont have to understand anything about the technical implementation. Just know that: ObjectStore is outrageously powerful; sophisticated; and even over-engineered. The perl interface is optimized to...


Platforms: *nix

Berkeley DB Java Edition is a high performance, transactional storage engine written entirely in Java. Like the highly successful Berkeley DB product, Berkeley DB Java Edition executes in the address space of the application, without the overhead of client/server communication. Berkeley DB Java...


Platforms: *nix

Transparent Parallel I/O Environment is a software environment (written in C++) that facilitates the implementation of external memory algorithms. The goal of theoretical work in the area of external memory algorithms (also called I/O algorithms or out-of-core algorithms) has been to develop...


Platforms: *nix

KoalaCalc is a free multi-purpose calculator for Mac OS X. In its compacted state, it looks similar to the standard calculator that comes with Mac OS X. However, simply click the 'advanced features' box and KoalaCalc comes to life to become one of the most advanced scientific, conversion,...


Platforms: Mac

ArcExplorer is a lightweight GIS data viewer developed by ESRI. This freely available software offers an easy way to perform basic GIS functions. ArcExplorer is used for a variety of display, query, and data retrieval applications and supports a wide variety of standard data sources. It can be...


Platforms: Mac

Introducing KoalaCalc Classic, the long-awaited Mac OS 9 port of the free multi-purpose calculator for Mac OS X. In its compacted state, KoalaCalc looks similar to the standard calculator that comes with the Mac OS. However, simply click the 'advanced' button and KoalaCalc comes to life to become...


Platforms: Mac

High Performance 3D-4D imaging software for a better insight to your science. Volocity is the universal solution for 3D analysis of fluorescence microscopy images. A collection of high performance 3D imaging software products, Volocity lets you turn images into understanding, relate cellular...


Platforms: Windows

High Performance 3D-4D imaging software for a better insight to your science. Volocity is the universal solution for 3D analysis of fluorescence microscopy images. A collection of high performance 3D imaging software products, Volocity lets you turn images into understanding, relate cellular...


Platforms: Windows

PySlice was built using the Python programming language to act as a specialized templating system. It was built in order to replace variables in a template data sets with numbers taken from all combinations of a grouped series of numbers. It creates a dataset from input template files for each...


Platforms: Windows

Creates a software environment enabling users to make basic bioinformatics analyses and smooth data management, combined with excellent graphical viewing and output options. Some bioinformatics features are: - GenBank searching and viewing (linear and circular views) - Multiple alignment of...


Platforms: Mac

This is a program for exploring longitude/latitude based data stored in NetCDF file format. Ncvtk is built on top of the VTK toolbox. Ncvtk has been designed with the aim of offering a high degree of interactivity to scientists who have a need to explore three-dimensional, time-dependent...


Platforms: Windows, Mac, *nix, Python, BSD Solaris

This function quickly finds local peaks or valleys (local extrema) in a noisy vector using a user defined magnitude threshold to determine if each peak is significantly larger (or smaller) than the data around it. The problem with the strictly derivative based peak finding algorithms is that if...


Platforms: Matlab

This program operates as a signal spectrum analyzer and a distortion meter at the same time. It can accept any numerical data representing few cycles of a signal. The data do not need to be equally separated. At least ten data points per cycle are needed. Higher number of data points will of...


Platforms: Matlab

The Particle Swarm Optimization Research Toolbox was written to assist with thesis research combating the premature convergence problem of particle swarm optimization (PSO). The control panel offers ample flexibility to accommodate various research directions. After specifying your intentions,...


Platforms: Matlab