Amino Acid Sequence
The Amino Acid Table widget displays general information on amino acids conformed with the IUPAC-IUB recommendations.
Platforms: Mac
License: Freeware | Download (156): Amino Acid Table Widget Download |
GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more.
It is free software under GPLv2+.
Requested Features:
- Import of Vector NTI...
Platforms: Mac
License: Freeware | Size: 3.7 MB | Download (600): GENtle for Mac OS X Download |
GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more.
It is free software under GPLv2+.
Requested Features:
- Import of Vector NTI...
Platforms: Linux
License: Freeware | Size: 1.7 MB | Download (529): GENtle for Linux Download |
GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more.
It is free software under GPLv2+.
Requested Features:
- Import of Vector NTI...
Platforms: Windows
License: Freeware | Size: 2.7 MB | Download (512): GENtle for Windows Download |
The FastPCR software was developed to be an integrated tools environment that provides comprehensive facilities for designing primers for most PCR applications including standard, long distance, inverse, real-time, multiplex, unique and group-specific; overlap extension PCR (OE-PCR)...
Platforms: Windows, XP, 2003, Windows Vista, XPX64, 7, 7x64
License: Freeware | Download (466): FastPCR Professional Download |
The Nucleic Acid MW widget allows to calculate the molecular weight of a nucleic acid sequence.
Platforms: Mac
License: Freeware | Download (104): Nucleic Acid MW widget Download |
Ever got confused while remembering all the various physical properties of all the standard 20 amino acids? Then use Amino Acid Finder!!
It has a built-in database and contains information about all the physical properties and lets you to search them
Platforms: Windows, Mac, Linux
License: Freeware | Size: 343.59 KB | Download (49): Amino Acid Finder Download |
ProDy is a free and open-source Python package for analyzing protein structural dynamics. It allows for quantitative analysis of heterogeneous experimental structural datasets and comparison with theoretically predicted conformational dynamics. The input for ProDy is the atomic coordinates of...
Platforms: *nix
License: Freeware | Size: 727.04 KB | Download (36): ProDy for Linux Download |
BiasViz is a Java applet for visualization of amino acid bias in multiple sequence alignments.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 130.91 KB | Download (44): BiasViz Download |
The Basic melting temperature widget allows to calculate the melting temperature of a nucleic acid sequence.
Platforms: Mac
License: Freeware | Size: 96 KB | Download (109): Basic melting temperature widget Download |
nebseq is a Python module for basic biological sequence manipulations. Import as usual >>> import nebseq Reverse complements The only note here is that revcomp does not check the input sequence to see if it looks like DNA or RNA. >>> nebseq.revcomp('ACGT') 'ACGT' >>>...
Platforms: *nix
License: Freeware | Size: 10.24 KB | Download (37): nebseq Download |
CodonW is a programme designed to simplify the Multivariate analysis (correspondence analysis) of codon and amino acid usage. It was written in ANSI compliant C. See the README file for more information.
Platforms: *nix
License: Freeware | Size: 153.6 KB | Download (46): CodonW For Linux Download |
Toolkit to examine the topology of a phylogenetic tree, place amino acid substitutions on specific branches, polarize them and compare amino acid sequences of homologous proteins to answer a wide range of questions about protein evolution.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 2 GB | Download (44): AcidMiner Download |
BASILISK is a probabilistic model of the conformational space of amino acid side chains in proteins. Unlike rotamer libraries, BASILISK models the chi angles in continuous space, including the influence of the protein's backbone.
Platforms: Mac, Linux
License: Freeware | Size: 72.23 KB | Download (44): BASILISK Download |
CodonW is a programme designed to simplify the Multivariate analysis (correspondence analysis) of codon and amino acid usage. It was written in ANSI compliant C. See the README file for more information.
Platforms: Windows, Mac, BSD, Linux
License: Freeware | Size: 152.39 KB | Download (66): CodonW Download |
iso2l (ˈaisəutuːl, spoken isotool) is a software to calculate the isotopic distribution of a chemical formula or a amino acid chain.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 59.54 KB | Download (43): iso2l Download |
MatrixGen is a Bioinformatics application used to generate scoring matrices from analysis of aligned Amino Acid and DNA data sets. These matrices can then be used by Clustal to generate more accurate alignments. Based upon the Henikoff BLOSUM method.
Platforms: Windows, Mac, BSD, Linux
License: Freeware | Size: 5.81 MB | Download (48): matrixGen Download |
Molevolve is a Java library for running a Genetic Algorithm to model the 3-dimensional structures of peptide chains from amino-acid sequences. Client code can specify its own peptide chain model, fitness functions and GA operations. Requires JDK 1.5.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 1.98 MB | Download (48): Molevolve Download |
This contest concerns a very simplified two-dimensional version of the protein folding problem. Given the amino acid sequence of a simplified protein, your job is to determine a final "optimally folded" configuration. Each potential arrangement of the protein sequence is associated with an energy...
Platforms: Matlab
License: Freeware | Size: 10 KB | Download (40): MATLAB Contest Protein Download |
Bio::Graphics::Glyph::cds module contains the "cds" glyph. SYNOPSIS See L< Bio::Graphics::Panel > and L< Bio::Graphics::Glyph >. This glyph draws features that are associated with a protein coding region. At high magnifications, draws a series of boxes that are color-coded to indicate the...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (95): Bio::Graphics::Glyph::cds Download |