Amino
The Amino Acid Table widget displays general information on amino acids conformed with the IUPAC-IUB recommendations.
Platforms: Mac
License: Freeware | Download (156): Amino Acid Table Widget Download |
Ever got confused while remembering all the various physical properties of all the standard 20 amino acids? Then use Amino Acid Finder!!
It has a built-in database and contains information about all the physical properties and lets you to search them
Platforms: Windows, Mac, Linux
License: Freeware | Size: 343.59 KB | Download (49): Amino Acid Finder Download |
GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more.
It is free software under GPLv2+.
Requested Features:
- Import of Vector NTI...
Platforms: Mac
License: Freeware | Size: 3.7 MB | Download (600): GENtle for Mac OS X Download |
GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more.
It is free software under GPLv2+.
Requested Features:
- Import of Vector NTI...
Platforms: Linux
License: Freeware | Size: 1.7 MB | Download (529): GENtle for Linux Download |
GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more.
It is free software under GPLv2+.
Requested Features:
- Import of Vector NTI...
Platforms: Windows
License: Freeware | Size: 2.7 MB | Download (512): GENtle for Windows Download |
CodonW is a programme designed to simplify the Multivariate analysis (correspondence analysis) of codon and amino acid usage. It was written in ANSI compliant C. See the README file for more information.
Platforms: *nix
License: Freeware | Size: 153.6 KB | Download (46): CodonW For Linux Download |
The FastPCR software was developed to be an integrated tools environment that provides comprehensive facilities for designing primers for most PCR applications including standard, long distance, inverse, real-time, multiplex, unique and group-specific; overlap extension PCR (OE-PCR)...
Platforms: Windows, XP, 2003, Windows Vista, XPX64, 7, 7x64
License: Freeware | Download (466): FastPCR Professional Download |
Toolkit to examine the topology of a phylogenetic tree, place amino acid substitutions on specific branches, polarize them and compare amino acid sequences of homologous proteins to answer a wide range of questions about protein evolution.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 2 GB | Download (44): AcidMiner Download |
BASILISK is a probabilistic model of the conformational space of amino acid side chains in proteins. Unlike rotamer libraries, BASILISK models the chi angles in continuous space, including the influence of the protein's backbone.
Platforms: Mac, Linux
License: Freeware | Size: 72.23 KB | Download (44): BASILISK Download |
BiasViz is a Java applet for visualization of amino acid bias in multiple sequence alignments.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 130.91 KB | Download (44): BiasViz Download |
CodonW is a programme designed to simplify the Multivariate analysis (correspondence analysis) of codon and amino acid usage. It was written in ANSI compliant C. See the README file for more information.
Platforms: Windows, Mac, BSD, Linux
License: Freeware | Size: 152.39 KB | Download (66): CodonW Download |
iso2l (ˈaisəutuːl, spoken isotool) is a software to calculate the isotopic distribution of a chemical formula or a amino acid chain.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 59.54 KB | Download (43): iso2l Download |
MatrixGen is a Bioinformatics application used to generate scoring matrices from analysis of aligned Amino Acid and DNA data sets. These matrices can then be used by Clustal to generate more accurate alignments. Based upon the Henikoff BLOSUM method.
Platforms: Windows, Mac, BSD, Linux
License: Freeware | Size: 5.81 MB | Download (48): matrixGen Download |
Molevolve is a Java library for running a Genetic Algorithm to model the 3-dimensional structures of peptide chains from amino-acid sequences. Client code can specify its own peptide chain model, fitness functions and GA operations. Requires JDK 1.5.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 1.98 MB | Download (48): Molevolve Download |
ProDy is a free and open-source Python package for analyzing protein structural dynamics. It allows for quantitative analysis of heterogeneous experimental structural datasets and comparison with theoretically predicted conformational dynamics. The input for ProDy is the atomic coordinates of...
Platforms: *nix
License: Freeware | Size: 727.04 KB | Download (36): ProDy for Linux Download |
Bio2Midi converts the text of a DNA or protein sequence to a MIDI file, which you may immediately audition, or import into any MIDI sequencer for further compositional processing. Choose to listen to the sequences as 4-note DNA bases, or as 20-note protein amino acids, or both at once. You can...
Platforms: Windows
License: Freeware | Size: 1.11 MB | Download (724): Bio2MIDI Download |
Bio::Tools::Run::PiseApplication::charge is a Perl module. Bio::Tools::Run::PiseApplication::charge Bioperl class for: CHARGE Protein charge plot (EMBOSS) Parameters: (see also: http://bioweb.pasteur.fr/seqanal/interfaces/charge.html for available values): charge (String) init...
Platforms: *nix
License: Freeware | Size: 829.44 KB | Download (101): Bio::Tools::Run::PiseApplication::charge Download |
Bio::Tools::CodonTable is a bioperl codon table object. SYNOPSIS # This is a read-only class for all known codon tables. The IDs are # the ones used by nucleotide sequence databases. All common IUPAC # ambiguity codes for DNA, RNA and animo acids are recognized. # to use use...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (127): Bio::Tools::CodonTable Download |
MassSpec::CUtilities is a Perl extension containing C utilities for use in mass spectrometry. SYNOPSIS MassSpec::CUtilities is an XS module so theres a chance that you or your target user might not get it to install cleanly on the target system; therefore its recommended to make its presence...
Platforms: *nix
License: Freeware | Size: 16.38 KB | Download (92): MassSpec::CUtilities Download |
MassSpec::ViewSpectrum::RealVsHypPeptide is a Perl module to view a real mass spectrum on the same graph as a hypothetical spectrum generated by fragmenting a peptide in silico. SYNOPSIS use MassSpec::ViewSpectrum::RealVsHypPeptide; open GRAPHIC, ">mygraphic.png" or die "Unable to open...
Platforms: *nix
License: Freeware | Size: 8.19 KB | Download (93): MassSpec::ViewSpectrum::RealVsHypPeptide Download |