Amigo Gene Ontology

OrientationChecker is a simple, Java based application specially designed to help you check and alter the orientation of 16S rRNA gene sequences.

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Alignment API is a development tool that allows various ontology matchers to share the same format and interface for accessing matching results. Using ontologies is the privileged way to achieve interoperability among heterogeneous systems within the Semantic web. However, as the ontologies...


Platforms: *nix

Games::Battleship::Player is a Battleship player class. SYNOPSIS use Games::Battleship::Player; $aeryk = Games::Battleship::Player->new(name => Aeryk); $gene = Games::Battleship::Player->new(name => Gene); print Player 1: , $aeryk->name, "n", Player 2: , $gene->name, "n";...


Platforms: *nix

GO::Model::Term is a term or concept in an ontology. SYNOPSIS # From a file use GO::Parser; my $parser = new GO::Parser({handler=>obj}); # create parser object $parser->parse("gene_ontology.obo"); # parse file -> objects my $graph = $parser->handler->graph; # get L object my $term =...


Platforms: *nix

Bio::MCPrimers is a Perl module to create molecular cloning PCR primer pairs for a given gene so that the gene can be directionally inserted into a vector. Solver is generic, restriction enzymes and their order in the vector are specified in the caller. XPORT SUBROUTINES sub find_mc_primers...


Platforms: *nix

Prot+eg+e is an ontology editor and a knowledge-base editor.Prot+eg+e is also an open-source, Java tool that provides an extensible architecture for the creation of customized knowledge-based applications.


Platforms: Mac

Main Workbench includes all features from CLC DNA Workbench, CLC RNA Workbench, and CLC Protein Workbench, as well as a range of Gene Expression Analysis. CLC Main Workbench creates a software environment enabling users to make a large number of advanced protein sequence analyses, combined with...


Platforms: Windows, XP, Windows Vista, XPX64, 7, 7x64

TreeFitter is designed as an accessible and handy application for parsimony-based tree fitting. TreeFitter is a CLi-based tool that can be used for analyzing problems in historical biogeography, coevolution, and in species tree - gene tree fitting.


Platforms: Windows

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Platforms: Mac

FluentEditor for OWL is comprehensive tool for editing and manipulating complex ontologies using Controlled Natural Language. Fluent editor provides alternative to XML-based OWL editors that is better suitable for human users. It's main feature is using Controlled English as a knowledge...


Platforms: Windows

Vogon is a ontology-based text annotation instrument specially designed for creating relations between terms in a text. All the created relations can then be exported as RDF triples. Vogon was built using the Java programming language.


Platforms: Windows

Mallard is a handy, Java based application based on the Pintail algorithm designed to work by comparing evolutionary distances between a query and subject sequence over the length of the 16S rRNA gene (small subunit rRNA), by employing a sampling window of specified size, progressing a fixed...


Platforms: Windows

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Platforms: Windows

Free The Next Generation Screensaver Star Trek: The Next Generation (often abbreviated to TNG) is an American science fiction television series created by Gene Roddenberry as part of the Star Trek franchise. Created about 21 years after the original Star Trek, and set in the 24th century from the...


Platforms: Windows

AnnaF is an automatic gene annotation framework, that is used to do some automatic annotation for C. higginsianum. It was also tested on F. graminearum and should work well for fungi in general. AnnaF was build upon the pipeline framework Anna.


Platforms: Windows, Mac, Linux

AgentOWL library support RDF/OWL ontology models in JADE agent system. The library use Jena for ontology model manipulation.


Platforms: Windows, Mac, Linux

AKtive Media is an ontology based cross-media annotation (Images and Text) system. Our goal is to automate the process of annoation by suggesting knowledge to the user in an interactive way while the user is annotating and hence minimizing user effort.


Platforms: Windows, Mac, Linux

The Gene Expression Programming Framework in Java.It separates the process of evolution from the process of interpretation of the chromosome, allowing the use of various schemes in the chromosome.


Platforms: Windows, Mac, Linux

Amine is a Multi-Layer Java Open Source Platform dedicated to the development of various kinds of Intelligent Systems (Knowledge-Based, Ontology-Based, Conceptual Graph Based, NLP, etc.) and Intelligent Agents. See: //amine-platform.sourceforge.net/


Platforms: Windows, Mac, Linux