Alleles
This script recodes AGCT alleles to the standard genotype format of A_A, A_B, and B_B. Prompts for a marker map strand field to use for recoding. The strand field must have allele information in the form [C/T]. Missing genotypes remain missing.
Platforms: Mac
License: Freeware | Size: 46.08 KB | Download (36): Recode AGCT Alleles to AB Download |
This script scans for allele names (e.g. 1,2,3,4) and prompts for new names (e.g. A,C,G,T). Missing alleles remain missing.
Platforms: Mac
License: Freeware | Size: 10.24 KB | Download (35): Rename Alleles Download |
Pedimap is a tool for exploring and visualizing the flow of phenotypes and alleles (observed or based on Identity-by-Descent calculations) through pedigrees. It has tools for the manual and automatic selection of parts of the pedigree based on criteria such as ancestors and/or progeny to a...
Platforms: Windows
License: Freeware | Size: 963 KB | Download (525): Pedimap Download |
The Hardy Weinberg equilibrium is a fundamental law in genetic.This function was deeply rewrited.If a locus is biallelic the function use the exact Hardy Weinberg test (similar to Fisher exact test) analyzing all possible tables. If you download TERNPLOT functions (ID:2299) the function plots a...
Platforms: Matlab
License: Freeware | Size: 10 KB | Download (46): HWtest Download |
This script takes genotypes from two different arrays and creates a consensus spreadsheet, and two optional spreadsheets. In order to run this script two spreadsheets of mapped genotype data are required. The spreadsheets may also contain non-marker mapped columns as they will be skipped when...
Platforms: Mac
License: Freeware | Size: 10.24 KB | Download (42): Consensus and Combination of Two Arrays Download |
MB Blood Type Inheritance is a blood type determination tool for your child. This is based on the genetic inheritance of a blood type from a parent to a child. Blood Type describes the composition of a personls red blood cells. It is determined by co-dominant alleles. This is one of the forms in...
Platforms: Windows
License: Freeware | Size: 596 KB | Download (497): MB Blood Type Inheritance Download |
GETHGVBASE returns polymorphism data from the human genome variation db http://hgvbase.cgb.ki.seHGVDATA = gethgvbase(SNPID) reads in a %hgvbase web record fromEMBL and creates a structure DATA %containing fields correspondingto the hgvBase keywords.FIELDNAME DESCRIPTIONS: a complete %description...
Platforms: Matlab
License: Freeware | Size: 10 KB | Download (43): gethgvbase Download |
GenoDive is a Mac-only program for population genetics analyses. The present version is a beta, which means that it will still contain bugs, and some analyses are not yet fully implemented. Please report any issues, bugs or praise that you may have to the author. This version should work on Mac...
Platforms: Mac
License: Freeware | Size: 8.25 MB | Download (170): GenoDive Download |
This script imports Affymetrix DMET data. Hemizygous markers are converted to homozygous markers, and tri-allelic markers are converted into two columns, each containing the major allele and one of the minor alleles. A DMET marker map (see below) can be selected after selecting the DMET report...
Platforms: Mac
License: Freeware | Size: 10.24 KB | Download (40): Import Affymetrix DMET Report Download |