Alignment

Simple plugin that let you show your slideshare presentations within content.1.1.8 for J!1.5.x (17/7-2009):Corrected an error notice by adding a missing isset check.1.1.7 for J!1.5.x (1/4-2009):Version 1.1.7 updated to use new player url, and added support of new PDF type and to switch to correct...

JE FAQ is an easy to use but powerful and excellent FAQ management. Our core competency from our front end and backend features will make you to sit suitable because we take care of your needs in the FAQ Joomla component needs. This is where we extending the suitability in Joomla.Front end...

This plugin allows you to include code listing from external files into your content items,with syntax highlighting and line numbers.Please click the demo link to see a live example in action.Latest Version==============v1.0.1 (for Joomla 1.0) and v1.5.1 (for Joomla 1.5)Released December 10,...


Platforms: PHP

The Twitter Follow button is a small widget which allows users to easily follow a Twitter account from any blog.You can configure the WPLOOK Twitter Follow Button: * "User to follow" set a user to follow; * "Followers count" hide/show the number of followers; * "Button color" change the button...


Platforms: PHP

SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. SAM aims to be a format that: * Is flexible enough to store all the alignment information generated by various alignment programs; * Is simple enough to be easily generated by alignment...


Platforms: Mac

Welcome to the SRMA home page. SRMA is a short read micro re-aligner for next-generation high throughput sequencing data. Sequence alignment algorithms examine each read independently. When indels occur towards the ends of reads, the alignment can lead to false SNPs as well as improperly placed...


Platforms: Mac

NCBI Genome Workbench is an integrated application for viewing and analyzing sequence data. With Genome Workbench, you can view data in publically available sequence databases at NCBI, and mix this data with your own private data. Genome Workbench can display sequence data in many ways,...


Platforms: Mac

Mugsy is a multiple whole genome aligner. Mugsy uses Nucmer for pairwise alignment, a custom graph based segmentation procedure for identifying collinear regions, and the segment-based progressive multiple alignment strategy from Seqan::TCoffee. Mugsy accepts draft genomes in the form of...


Platforms: Mac

Recco analyzes alignments of sequences that evolved subject to recombination and mutation. The analysis provides evidence as to whether a dataset contains recombination, which sequence is a recombinant and where the recombination breakpoints are. The analysis is based on explaining one sequence...


Platforms: Mac

Laj is a tool for viewing and manipulating the output from pairwise alignment programs such as blastz. It can display interactive dotplot, pip, and text representations of the alignments, a diagram showing the locations of exons and repeats, and annotation links to other web sites containing...


Platforms: Mac

The CBCAnalyzer (CBC = compensatory base change) is a custom written software toolbox consisting of three parts, CTTransform, CBCDetect, and CBCTree. CTTransform reads several CT-file formats (ct, RNAviz ct or Mac ct), and generates a so called ``bracket-dot-bracket'' format that typically is...


Platforms: Mac

SAMMate, a Graphical User Interface (GUI) RNA-seq analysis pipeline, allows biomedical researchers to quickly process SAM/BAM files and is compatible with both single-end and paired-end sequencing technologies. SAMMate automates some of more standard procedures in RNA-seq analysis. Features:...


Platforms: Mac

KnowIt is a tool for managing notes which are organized in tree-like hierarchy. It is similar to TuxCards, but KDE-based (it requires KDE 3). KnowIt is developed by Michal Rudolf. Features Notes management: notes organized in tree, easily moved using drag&drop searching in notes finding...


Platforms: *nix

FFP (Feature frequency profile) is an alignment free comparison tool for phylogenetic analysis and text comparison. It can be applied to nucleotide sequences, complete genomes, proteomes and even used for text comparison. Features . Comparison of Genomes, protein and nucleic acid sequences...


Platforms: *nix

Barlesque is an extension for Mozilla Firefox 4.x that reclaims useful window space by collapsing the wide grey add-on bar into a neat set of add-on buttons. This extension is Firefox 4.x-only, as add-on bar is a new feature (introduced in Firefox 4.0b7). USAGE ===== Barlesque expects user to...


Platforms: *nix

MUMmerGPU is a high-throughput DNA sequence alignment program that runs on nVidia G80-class GPUs. It aligns sequences in parallel on the video card to accelerate the widely used serial CPU program MUMmer.


Platforms: *nix

NGSView is a generally applicable, flexible and extensible next-generation sequence alignment editor. The software allows for visualization and manipulation of millions of sequences simultaneously on a desktop computer, through a graphical interface.


Platforms: *nix

Lavians PDF Label provides a visual label editor to allow you to define the label field format what you want, just like label fieldname, position, font color, font size, alignment and font type. Key Features of Lavians PDF Label: 1. Lavians PDF Label can batch add all the label cells to PDF...


Platforms: Windows, Windows 7

AscToTab is a free utility that converts *plain* text and comma-separated or tab-delimited text files containing table data into tables. The program can create either HTML or RTF tables with the output written to file. For HTML tables the output can be direct to the clipboard, ready to paste...


Platforms: Windows

XD++ Library for MFC by UCanCode.Net Software, an C++ class framework that provides your applications with a drawing surface for diagramming, symbol manipulation, drag and drop, scrolling, zooming, and many other graphics capabilities. It incorporate custom graphical objects and enhanced drawing...


Platforms: Windows