Aegis Bio Software
Bio::Graphics::FeatureFile is a set of Bio::Graphics features, stored in a file. SYNOPSIS use Bio::Graphics::FeatureFile; my $data = Bio::Graphics::FeatureFile->new(-file => features.txt); # create a new panel and render contents of the file onto it my $panel = $data->new_panel; my...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (99): Bio::Graphics::FeatureFile Download |
Bio::DB::GFF::Feature is a relative segment identified by a feature type. Bio::DB::GFF::Feature is a stretch of sequence that corresponding to a single annotation in a GFF database. It inherits from Bio::DB::GFF::RelSegment, and so has all the support for relative addressing of this class and...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (92): Bio::DB::GFF::Feature Download |
Software::Packager::Svr4 is the Software::Packager extension for System VR4 packages. SYNOPSIS use Software::Packager; my $packager = new Software::Packager(svr4); This module is used to create software packages in a format suitable for installation with pkgadd. FUNCTIONS new() This...
Platforms: *nix
License: Freeware | Size: 14.34 KB | Download (89): Software::Packager::Svr4 Download |
Bio::Biblio is a Bibliographic Query Service module. SYNOPSIS use Bio::Biblio; my $biblio = new Bio::Biblio; print $biblio->find (perl)->get_count . "n"; my $collection = $biblio->find (brazma, authors); while ( $collection->has_next ) { print $collection->get_next; } #The new()...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (101): Bio::Biblio Download |
Bio::Graph::SimpleGraph is a Perl module that can create and manipulate undirected graphs. SYNOPSIS use Bio::Graph::SimpleGraph; my $graph=new SimpleGraph; # read pairs of nodes from STDIN while (<>) { my($node1,$node2)=split; $graph->add_edge($node1,$node2); } my @nodes=graph->nodes;...
Platforms: *nix
License: Freeware | Size: 5.6 MB | Download (107): Bio::Graph::SimpleGraph Download |
Bio::ConnectDots::SimpleGraph is a simple, hopefully fast undirected graph package. SYNOPSIS use SimpleGraph; my $graph=new Bio::ConnectDots::SimpleGraph; # read pairs of nodes from STDIN while (<>) { my($node1,$node2)=split; $graph->add_edge($node1,$node2); } my @nodes=graph->nodes;...
Platforms: *nix
License: Freeware | Size: 102.4 KB | Download (93): Bio::ConnectDots::SimpleGraph Download |
Bio::Affymetrix::CDF is a Perl module to parse Affymetrix CDF files. SYNOPSIS use Bio::Affymetrix::CDF; # Parse the CDF file my $cdf=new Bio::Affymetrix::CDF({"probemode"=>0}); $cdf->parse_from_file("foo.cdf"); # Find some fun facts about this chip type print...
Platforms: *nix
License: Freeware | Size: 64.51 KB | Download (120): Bio::Affymetrix::CDF Download |
Score Cluster System Software is a cluster system software is designed for the high performance cluster environment without using the TCP/IP protocol stack. Score Cluster System Software features high performance communication, efficient computer management and single-system image, higher...
Platforms: *nix
License: Freeware | Download (108): Score Cluster System Software Download |
Bio::AlignIO::bl2seq is a bl2seq sequence input/output stream. SYNOPSIS Do not use this module directly. Use it via the Bio::AlignIO class, as in: use Bio::AlignIO; $in = Bio::AlignIO->new(-file => "inputfilename" , -format => bl2seq); $aln = $in->next_aln(); This object can create...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (129): Bio::AlignIO::bl2seq Download |
Bio::AlignIO::msf is a Perl module with msf sequence input/output stream. SYNOPSIS Do not use this module directly. Use it via the Bio::AlignIO class. This object can transform Bio::Align::AlignI objects to and from msf flat file databases. The rest of the documentation details each of...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (96): Bio::AlignIO::msf Download |
Open RObot COntrol Software (Orocos) framework applies software patterns in C++ to achieve real-time execution of software components and provides an infrastructure to quickly integrate them in a real-time operating system such as RTAI or RTLinux, although it can be tested on normal Linux...
Platforms: *nix
License: Freeware | Size: 3 MB | Download (142): Open RObot COntrol Software Download |
Software::Packager::Rpm is a suite of Perl modules providing a common interface for the creation of platform specific software installation packagers. add_item() my %object_data = ( SOURCE => /source/file1, TYPE => file, KIND => doc, DESTINATION => /usr/local/file1, USER => joe, GROUP...
Platforms: *nix
License: Freeware | Size: 13.31 KB | Download (105): Software::Packager::Rpm Download |
Software::Packager is a suite of Perl modules providing a common interface for the creation of platform specific software installation packagers. INSTALLATION Software::Packager uses the standard perl module install process perl Makefile.PL make make test (optional but recommended) make...
Platforms: *nix
License: Freeware | Size: 13.31 KB | Download (105): Software::Packager::Object::Rpm Download |
Software::Packager::Tar is used to create tar files with the required structure as specified by the list of object added to the packager. SYNOPSIS use Software::Packager; my $packager = new Software::Packager(tar); FUNCTIONS new() This method creates and returns a new class object....
Platforms: *nix
License: Freeware | Size: 21.5 KB | Download (97): Software::Packager::Tar Download |
Software::Packager::Object is a generic object data storage. SYNOPSIS use Software::Packager::Object; This module is used by Software::Packager for holding data for a each item added to the a software package. It provides an easy way of accessing the data for each object to be installed....
Platforms: *nix
License: Freeware | Size: 21.5 KB | Download (96): Software::Packager::Object Download |
Software::Packager::Object::Aix module it extends Software::Packager::Object and adds extra methods for use by the AIX software packager. FUNCTIONS LPP TYPE The LPP type for objects determines the type of LPP package created. If the objects destination is under /usr/share then the object is...
Platforms: *nix
License: Freeware | Size: 20.48 KB | Download (111): Software::Packager::Object::Aix Download |
Software::Packager::Solaris is the Software::Packager extension for Solaris 2.5.1 and above. SYNOPSIS use Software::Packager; my $packager = new Software::Packager(solaris); This module is used to create software packages in a format suitable for installation with pkgadd. The process of...
Platforms: *nix
License: Freeware | Size: 14.34 KB | Download (88): Software::Packager::Solaris Download |
Software::Packager::Aix is the Software::Packager extension for AIX 4.1 and above. SYNOPSIS use Software::Packager; my $packager = new Software::Packager(aix); This module is used to create software packages in a Backup-format file (bff) suitable for installation with installp. This...
Platforms: *nix
License: Freeware | Size: 20.48 KB | Download (103): Software::Packager::Aix Download |
Bio::GMOD::Admin::Monitor::blat is a Perl module that can monitor a BLAT server. SYNOPSIS Check the installed version of a MOD use Bio::GMOD::Util::CheckVersions.pm my $gmod = Bio::GMOD::Util::CheckVersions->new(-mod=>WormBase); my $version = $gmod->live_version; Update a MOD installation...
Platforms: *nix
License: Freeware | Size: 71.68 KB | Download (106): Bio::GMOD::Admin::Monitor::blat Download |
Bio::Network::IO::dip_tab is a Perl class for parsing interaction data in DIP tab-delimited format. SYNOPSIS Do not use this module directly, use Bio::Network::IO. For example: my $io = Bio::Network::IO->new(-format => dip_tab, -file => data.dip); my $network = $io->next_network; The...
Platforms: *nix
License: Freeware | Size: 99.33 KB | Download (96): Bio::Network::IO::dip_tab Download |