Tissue

Tissue Simulation Toolkit is a two-dimensional library for the Cellular Potts Model (Graner and Glazier 1992; Phys. Rev. Lett. 69, 2013), which is increasingly used by computational biologists to study tissue patterning and developmental mechanisms. Features . Solved some minor problems...

Tissue Modeling Tool (TMT) is a Matlab-based open source project aiming to share constitutive modeling code and algorithms within the tissue biomechanics community. It is meant to be modular, fast, and easily extensible.

NetAtlas is a Cytoscape plugin that uses tissue gene expression data to filter cellular signaling network. The plugin identifies of tissue-defined networks, tissue-specific network components, and components with correlated expression across tissues.


Platforms: Mac

NetAtlas is a Cytoscape plugin that uses tissue gene expression data to filter cellular signaling network. The plugin identifies of tissue-defined networks, tissue-specific network components, and components with correlated expression across tissues.


Platforms: *nix

Homeopathy Databank of homeopathic remedies and therapeutic options. Homeopathy Software provides a wealth of information in 3 databanks: Afflictions (displays homeopathic remedy charts by affliction and related symptoms), Materia Medica (lists information on specific homeopathic products), and...


Platforms: Windows, Windows 8, Windows 7

This is a collection of ImageJ macros (scripts) for performing color deconvolution and analysis of immunohistochemistry (IHC) staining on tissue microarray (TMA) images


Platforms: Windows, Mac, Linux

TheCounter was designed as a helping hand for people who need to count specificallylabeled cells in histochemically or immunohistochemically stained tissue samples.


Platforms: Windows, Mac, Linux

Revised from Dr. Wang Lihong's MCML. Tested ok on windowsXP+Matlab7.0. Performes about 30% to 40% faster than MCML.Beta version 1.01.qiang.2@osu.edu


Platforms: Matlab

EUDMODEL(DVH), where DVH is a 2 column matrix corresponding to the cumulative, not differential, dose volume histogram. The 1st column corresponds to increasing absolute dose or percentage dose values, and the 2nd column to the corresponding absolute or relative volume value. The matrix must have...


Platforms: Matlab

[Jaccard,Dice,rfp,rfn]=sevaluate(m,o)gets label matrix for one tissue in segmented and ground truthand returns the similarity indicesm is a tissue in gold trutho is the same tissue in segmented imagerfp false pasitive ratiorfn false negative ratio


Platforms: Matlab

TMAJ is software for Tissue MicroArrays (TMA's). Patients, specimens, blocks, slides, cores, images, and scores can all be stored and viewed. Features include advanced security, custom dynamic fields, and an image analysis program.


Platforms: *nix

Natural Healing Introduction lists and describes alternative medicine therapies such as: Aromatherapy, Acupuncture, Autogenic training, Ayurveda, Biofeedback, Chiropractic treatment, Color therapy, Herbs, Herbal remedies, Homeopathy, Hydrotherapy, Hypnosis, Massage, Magnetic fields, Meditation,...


Platforms: Windows

Are you ready to play doctor? Step into the emergency room and don't be afraid to get your hands dirty in this adventure/puzzle game where your skill and steady movement can save a life. Using only your computer's mouse, you must navigate through the human body and extract deadly...


Platforms: Windows

This free Heart Rate Monitor software allows you to make quick, easy, and accurate measurements of your heart rate (beats per minute). Measure bpm over 5 different intervals, See the variance in your bpm, Save screenshots in .bmp-format. Easy to use, Start the program; Sit, stand, or lie down......


Platforms: Windows

Curtains is a set of After Effects plug-ins. With help of this you can art up you video with eye-catching dynamic pieces of fabric, waving flags, gauzy curtains, heavy tableau curtains and many fantastic transition effects. Working with our set is really easy. You don't have to create a...


Platforms: Windows

TINA is an open source environment developed to accelerate the process of image analysis research. TINA provides functionality to assist in all areas of image analysis including handling of image, image feature and geometrical data; statistical and numerical analysis of data; GUI development as...


Platforms: *nix

Mareblu is a scuba dive simulator based on an Haldanian model. It uses a 10 tissue model and graphically displays Nitrogen saturation and desaturation into the different tissues of the body during a simulated diving. Mareblu can perform repetitive dives, track air consumption, and adjust...


Platforms: Mac

AlleleID is a comprehensive desktop tool designed to address the challenges of pathogen detection, bacterial identification or taxa/species discrimination using microarrays and TaqMan® and molecular beacon qPCR assays. With ClustalW multiple sequence alignment at its core, AlleleID can design...


Platforms: Mac

caTIES or Cancer Text Information Extraction System is a project focused on two important challenges of bioinformatics.The problems that want to be overcomed are related to information extraction from free text and access to tissue. Specifically, caTIES has three primary goals: · Extract coded...


Platforms: Windows, XP, Windows Vista, 7

3DimViewer is a lightweight 3D viewer of medical DICOM datasets distributed as open source software. Its license allows you to use it for free. The viewer is multiplatform software written in C++ that runs on Windows and Linux systems. Basic Features - Truly 3D viewer of volumetric data -...


Platforms: Windows, Linux