Structural

This software is documented in the Journal of Structural Geology article:"Fold Geometry Toolbox - Automated determination of fold shape, shortening, and material properties"by Marta Adamuszek, Daniel Walter Schmid, and Marcin Dabrowski. FGT is a program to analyze fold geometry in 2D. This...

CleverCSS is a small markup language for CSS inspired by Python that can be used to build a style sheet in a clean and structured way. In many ways it's cleaner and more powerful than CSS2 is.The most obvious difference to CSS is the syntax: it is indentation based and not flat. While this is...

JBeam is a Java2 application for introductory level two-dimensional static and dynamic structural analysis. It supports arbitrary hinged Euler-Bernoulli and Thimoshenko beams and truss elements. Features * object oriented graphical user interface * static and modal analysis of plane frame...


Platforms: Mac

CMView is an intervative contact map visualization and analysis tool. The current version is 0.9.6 Please send feedback to stehr ?*A*t molgen.mpg.de Main features: * Combined contact map and 3D structure view (using PyMol) * Various im- and export options: PDB files, Online PDB, Image...


Platforms: Mac

ProDy is a Python package designed for protein structural dynamics analysis. ProDy is developed by Ahmet Bakan and licensed under the GPLv3. New features and functions are constantly being added to ProDy. The following are the main features that are present and working fine: Protein structure...


Platforms: Mac

The Mass Spectrometry Laboratory is a multidisciplinary laboratory, given the versatility of mass spectrometric techniques. The objective of the Mass Spectrometry Laboratory is to contribute to the development of new fundamental concepts and to enlighten their applications in the fields of...


Platforms: Mac

QPDF is a command-line program that does structural, content-preserving transformations on PDF files. It could have been called something like pdf-to-pdf. It also provides many useful capabilities to developers of PDF-producing software or for people who just want to look at the innards of a PDF...


Platforms: *nix

SVDetect is a application for the isolation and the type prediction of intra- and inter-chromosomal rearrangements from paired-end/mate-pair sequencing data provided by the high-throughput sequencing technologies This tool aims to identifying structural variations with both clustering and...


Platforms: *nix

igraph is a free software package for creating and manipulating undirected and directed graphs. It includes implementations for classic graph theory problems like minimum spanning trees and network flow, and also implements algorithms for some recent network analysis methods, like community...


Platforms: *nix

ESBTL (Easy Structural Biology Template Library) is a lightweight C++ library that allows the handling of PDB data and provides a data structure suitable for geometric analysis and advanced constructions.


Platforms: *nix

The Biomolecule Toolkit is a library for modeling biological macromolecules such as proteins, DNA and RNA. It provides a C++ interface for common tasks in computational structural biology to facilitate and standardize the development of molecular modeling, design and analysis tools.


Platforms: *nix

HOPPscore is a simple application for evaluating the structural quality of theoretical or experimental protein structures. Protein are evaluated by comparing structure fragments to a reference dictionary of fragments from high resolution structures. Features . Protein Structure Quality...


Platforms: *nix

The NSS module is a fork from the nss_ldap package by PADL Software Pty Ltd.. This fork was done to implement some structural design changes. These changes were needed because there are some issues with the original design. See the documentation section for more details. The biggest advantages of...


Platforms: *nix

ProDy is a free and open-source Python package for analyzing protein structural dynamics. It allows for quantitative analysis of heterogeneous experimental structural datasets and comparison with theoretically predicted conformational dynamics. The input for ProDy is the atomic coordinates of...


Platforms: *nix

VTracer is a Verilog Testbench developer aid. Contains well documented Verilog-Perl co-simulation environment (TCP sockets based), structural Verilog parser, demo Testbenches.


Platforms: *nix

The Xtal System is a comprehensive suite of small molecule structural solution, refinement and analysis software, supporting both X-ray, neutron and electron diffraction data. It runs on both Unix and MS Win32 platforms and uses tcl/tk graphics.


Platforms: *nix

Structures Office L.L.C. is a new company, with the objective of offering high quality structural analysis tools, at low cost, which integrate well with commonly used engineering tools such as Excel and Matlab. In Release 1.2, Structures Office supports construction of arbitrary compact...


Platforms: Windows, Windows 8, Windows 7, Windows Server

XLSTAT is a complete analysis and statistics add-in for Excel. It has been developed since 1993. XLSTAT includes more than 240 features in general or field-specific solutions. The use of Excel as an interface makes XLSTAT a user-friendly and highly efficient statistical and multivariate data...


Platforms: Windows, Windows 8, Windows 7, Windows Server

Tool converts a MS Access database into a SQL Server database preserving all table structure details, and supports the conversion of the views and procedures. Moreover, the tool supports solution of structural problems between MS Access and SQL Server.


Platforms: Windows

XmlShell, the ultimate lightweight XML editor, is a Windows-based XML editor. It's fast, powerful, flexible, and intuitive. Main features: 1. True side-by-side XML tree structural view and table/editor/browser views: You can make changes in the XML tree view and immediately see your changes...


Platforms: Windows