Simple Bio Data
Simple Data Backup is a FREE program that allows you to quickly and easily back up an entire folder structure from one drive to another. In addition, you can have the program automatically back up certain folders every so many days. It is a simple, but effective program at maintaining a backup of...
Platforms: Windows
License: Freeware | Size: 1024 B | Download (99): Simple Data Backup Download |
Bio::Tree::NodeNHX is a Simple Tree Node with support for NHX tags. SYNOPSIS use Bio::Tree::NodeNHX; my $nodeA = new Bio::Tree::NodeNHX(); my $nodeL = new Bio::Tree::NodeNHX(); my $nodeR = new Bio::Tree::NodeNHX(); my $node = new Bio::Tree::NodeNHX(); $node->add_Descendents($nodeL);...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (113): Bio::Tree::NodeNHX Download |
Bio::OntologyIO::simplehierarchy is a base class parser for simple hierarchy-by-indentation type formats. SYNOPSIS use Bio::OntologyIO; # do not use directly -- use via Bio::OntologyIO my $parser = Bio::OntologyIO->new ( -format => "simplehierarchy", -file => "pathology_terms.csv",...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (86): Bio::OntologyIO::simplehierarchy Download |
Bio::TreeIO::svggraph is a simple output format that converts a Tree object to an SVG output. SYNOPSIS use Bio::TreeIO; my $in = new Bio::TreeIO(-file => input, -format => newick); my $out = new Bio::TreeIO(-file => >output, -format => svggraph); while( my $tree = $in->next_tree ) { my...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (90): Bio::TreeIO::svggraph Download |
Bio::Genex::Software is Perl module with methods for processing data from the GeneX DB table: Software. SYNOPSIS use Bio::Genex::Software; # instantiating an instance my $Software = Bio::Genex::Software->new(id=>47); # retrieve data from the DB for all columns $Software->fetch(); #...
Platforms: *nix
License: Freeware | Size: 552.96 KB | Download (101): Bio::Genex::Software Download |
Bio::ConnectDots::SimpleGraph is a simple, hopefully fast undirected graph package. SYNOPSIS use SimpleGraph; my $graph=new Bio::ConnectDots::SimpleGraph; # read pairs of nodes from STDIN while (<>) { my($node1,$node2)=split; $graph->add_edge($node1,$node2); } my @nodes=graph->nodes;...
Platforms: *nix
License: Freeware | Size: 102.4 KB | Download (87): Bio::ConnectDots::SimpleGraph Download |
Bio::Network::IO::dip_tab is a Perl class for parsing interaction data in DIP tab-delimited format. SYNOPSIS Do not use this module directly, use Bio::Network::IO. For example: my $io = Bio::Network::IO->new(-format => dip_tab, -file => data.dip); my $network = $io->next_network; The...
Platforms: *nix
License: Freeware | Size: 99.33 KB | Download (90): Bio::Network::IO::dip_tab Download |
Declare::Constraints::Simple is a Perl module for Declarative Validation of Data Structures. SYNOPSIS use Declare::Constraints::Simple-All; my $profile = IsHashRef( -keys => HasLength, -values => IsArrayRef( IsObject )); my $result1 = $profile->(undef); print $result1->message, "n"; #...
Platforms: *nix
License: Freeware | Size: 30.72 KB | Download (87): Declare::Constraints::Simple Download |
Bio::SAGE::Comparison module compares data from serial analysis of gene expression (SAGE) libraries. SYNOPSIS use Bio::SAGE::Comparison; $sage = Bio::SAGE::Comparison->new(); This module provides several tools for comparing data generated from serial analysis of gene expression (SAGE)...
Platforms: *nix
License: Freeware | Size: 8.19 KB | Download (104): Bio::SAGE::Comparison Download |
Bio::NEXUS::DataBlock is a Perl module that represents the deprecated DATA Block in NEXUS file. SYNOPSIS $block_object = new Bio::NEXUS::DataBlock($type, $block, $verbose, $taxlabels_ref); The DataBlock class represents the deprecated Data Block in a NEXUS file. Data Blocks are still used...
Platforms: *nix
License: Freeware | Size: 153.6 KB | Download (104): Bio::NEXUS::DataBlock Download |
Simple Data Grid can be used to display MySQL database query result data in an HTML table grid.There are classes to define details of the headers and body of table grid. There is also a class for executing MySQL database queries and return the results in a bi-dimensional array.The data grid...
Platforms: PHP
License: Freeware | Size: 81.92 KB | Download (42): Simple Data Grid Download |
A-PDF Data Extractor is a simple utility program that lets you batch extract certain text information within the PDF to XLS, CSV or XML file format. It provide a visual PDF data extraction rule editor to verify and define what data fields to be gathered conveniently and automatically....
Platforms: Windows
License: Shareware | Cost: $27.00 USD | Size: 2.66 MB | Download (573): A-PDF Data Extractor Download |
Bio::AnnotationCollectionI is a Perl interface for annotation collections. SYNOPSIS # get an AnnotationCollectionI somehow, eg $ac = $seq->annotation(); foreach $key ( $ac->get_all_annotation_keys() ) { @values = $ac->get_Annotations($key); foreach $value ( @values ) { # value is an...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (89): Bio::AnnotationCollectionI Download |
Bio::Graph::SimpleGraph is a Perl module that can create and manipulate undirected graphs. SYNOPSIS use Bio::Graph::SimpleGraph; my $graph=new SimpleGraph; # read pairs of nodes from STDIN while (<>) { my($node1,$node2)=split; $graph->add_edge($node1,$node2); } my @nodes=graph->nodes;...
Platforms: *nix
License: Freeware | Size: 5.6 MB | Download (101): Bio::Graph::SimpleGraph Download |
Bio::Phylo::IO Perl module contains input and output of phylogenetic data. SYNOPSIS use Bio::Phylo::IO; # parsing a tree from a newick string my $tree_string = (((A,B),C),D);; my $tree = Bio::Phylo::IO->parse( -string => $tree_string, # old parser, always adds node labels -format =>...
Platforms: *nix
License: Freeware | Size: 143.36 KB | Download (91): Bio::Phylo::IO 0.17 Download |
Bio::SAGE::DataProcessing module processes raw serial analysis of gene expression (SAGE) data. SYNOPSIS use Bio::SAGE::DataProcessing; $sage = Bio::SAGE::DataProcessing->new(); # open sequence and quality files open( READS, "library.fasta" ); open( QUAL, "library.qual.fasta" ); #...
Platforms: *nix
License: Freeware | Size: 19.46 KB | Download (92): Bio::SAGE::DataProcessing Download |
Bio::GMOD is a unified API for Model Organism Databases. SYNOPSIS Check the installed version of a MOD use Bio::GMOD::Util::CheckVersions.pm my $mod = Bio::GMOD::Util::CheckVersions->new(-mod=>WormBase); my $version = $mod->live_version; Update a MOD installation use Bio::GMOD::Update;...
Platforms: *nix
License: Freeware | Size: 71.68 KB | Download (97): Bio::GMOD Download |
Data::Diver is a simple, ad-hoc access to elements of deeply nested structures. SUMMARY Data::Diver provides the Dive() and DiveVal() functions for ad-hoc access to elements of deeply nested data structures, and the DiveRef(), DiveError(), DiveClear(), and DiveDie() support functions....
Platforms: *nix
License: Freeware | Size: 8.19 KB | Download (87): Data::Diver Download |
A-PDF Form Data Extractor is a simple utility program that lets you batch export PDF form data to CSV or XML file format. It provide a visual form fields extraction rule editor to verify and define what form fields to be gathered conveniently and automatically.
A-PDF Form Data Extractor does...
Platforms: Windows
License: Shareware | Cost: $27.00 USD | Size: 2.42 MB | Download (448): A-PDF Form Data Extractor Download |
Easy Data Masking - simple to install, flexible, and self-explanatory.
Create test data and mask sensitive data.
Orpheus Data Masking Suite is exceptionally easy to use. You don't need IT skills to know how to mask the sensitive data you would like to protect. Try the free demo version of...
Platforms: Windows
License: Freeware | Size: 3.65 MB | Download (101): Data Masking Suite Download |