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Simple Bio Data software
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Simple Bio Data

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Added: August 26, 2008 | Visits: 1.168

Simple Data Backup Simple Data Backup is a FREE program that allows you to quickly and easily back up an entire folder structure from one drive to another. In addition, you can have the program automatically back up certain folders every so many days. It is a simple, but effective program at maintaining a backup of...



Platforms: Windows

License: Freeware Size: 1024 B Download (99): Simple Data Backup Download

Added: January 18, 2010 | Visits: 1.122

Bio::Tree::NodeNHX Bio::Tree::NodeNHX is a Simple Tree Node with support for NHX tags. SYNOPSIS use Bio::Tree::NodeNHX; my $nodeA = new Bio::Tree::NodeNHX(); my $nodeL = new Bio::Tree::NodeNHX(); my $nodeR = new Bio::Tree::NodeNHX(); my $node = new Bio::Tree::NodeNHX(); $node->add_Descendents($nodeL);...





Platforms: *nix

License: Freeware Size: 4.7 MB Download (113): Bio::Tree::NodeNHX Download

Added: April 02, 2010 | Visits: 865

Bio::OntologyIO::simplehierarchy Bio::OntologyIO::simplehierarchy is a base class parser for simple hierarchy-by-indentation type formats. SYNOPSIS use Bio::OntologyIO; # do not use directly -- use via Bio::OntologyIO my $parser = Bio::OntologyIO->new ( -format => "simplehierarchy", -file => "pathology_terms.csv",...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (86): Bio::OntologyIO::simplehierarchy Download

Added: November 05, 2010 | Visits: 929

Bio::TreeIO::svggraph Bio::TreeIO::svggraph is a simple output format that converts a Tree object to an SVG output. SYNOPSIS use Bio::TreeIO; my $in = new Bio::TreeIO(-file => input, -format => newick); my $out = new Bio::TreeIO(-file => >output, -format => svggraph); while( my $tree = $in->next_tree ) { my...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (90): Bio::TreeIO::svggraph Download

Added: October 04, 2010 | Visits: 1.197

Bio::Genex::Software Bio::Genex::Software is Perl module with methods for processing data from the GeneX DB table: Software. SYNOPSIS use Bio::Genex::Software; # instantiating an instance my $Software = Bio::Genex::Software->new(id=>47); # retrieve data from the DB for all columns $Software->fetch(); #...


Platforms: *nix

License: Freeware Size: 552.96 KB Download (101): Bio::Genex::Software Download

Added: April 08, 2010 | Visits: 645

Bio::ConnectDots::SimpleGraph Bio::ConnectDots::SimpleGraph is a simple, hopefully fast undirected graph package. SYNOPSIS use SimpleGraph; my $graph=new Bio::ConnectDots::SimpleGraph; # read pairs of nodes from STDIN while (<>) { my($node1,$node2)=split; $graph->add_edge($node1,$node2); } my @nodes=graph->nodes;...


Platforms: *nix

License: Freeware Size: 102.4 KB Download (87): Bio::ConnectDots::SimpleGraph Download

Added: August 01, 2010 | Visits: 926

Bio::Network::IO::dip_tab Bio::Network::IO::dip_tab is a Perl class for parsing interaction data in DIP tab-delimited format. SYNOPSIS Do not use this module directly, use Bio::Network::IO. For example: my $io = Bio::Network::IO->new(-format => dip_tab, -file => data.dip); my $network = $io->next_network; The...


Platforms: *nix

License: Freeware Size: 99.33 KB Download (90): Bio::Network::IO::dip_tab Download

Added: October 27, 2010 | Visits: 1.015

Declare::Constraints::Simple Declare::Constraints::Simple is a Perl module for Declarative Validation of Data Structures. SYNOPSIS use Declare::Constraints::Simple-All; my $profile = IsHashRef( -keys => HasLength, -values => IsArrayRef( IsObject )); my $result1 = $profile->(undef); print $result1->message, "n"; #...


Platforms: *nix

License: Freeware Size: 30.72 KB Download (87): Declare::Constraints::Simple Download

Added: May 09, 2010 | Visits: 1.119

Bio::SAGE::Comparison Bio::SAGE::Comparison module compares data from serial analysis of gene expression (SAGE) libraries. SYNOPSIS use Bio::SAGE::Comparison; $sage = Bio::SAGE::Comparison->new(); This module provides several tools for comparing data generated from serial analysis of gene expression (SAGE)...


Platforms: *nix

License: Freeware Size: 8.19 KB Download (104): Bio::SAGE::Comparison Download

Added: February 24, 2010 | Visits: 843

Bio::NEXUS::DataBlock Bio::NEXUS::DataBlock is a Perl module that represents the deprecated DATA Block in NEXUS file. SYNOPSIS $block_object = new Bio::NEXUS::DataBlock($type, $block, $verbose, $taxlabels_ref); The DataBlock class represents the deprecated Data Block in a NEXUS file. Data Blocks are still used...


Platforms: *nix

License: Freeware Size: 153.6 KB Download (104): Bio::NEXUS::DataBlock Download

Added: August 11, 2013 | Visits: 824

Simple Data Grid Simple Data Grid can be used to display MySQL database query result data in an HTML table grid.There are classes to define details of the headers and body of table grid. There is also a class for executing MySQL database queries and return the results in a bi-dimensional array.The data grid...


Platforms: PHP

License: Freeware Size: 81.92 KB Download (42): Simple Data Grid Download

Released: May 09, 2011  |  Added: May 16, 2011 | Visits: 2.214

A-PDF Data Extractor A-PDF Data Extractor is a simple utility program that lets you batch extract certain text information within the PDF to XLS, CSV or XML file format. It provide a visual PDF data extraction rule editor to verify and define what data fields to be gathered conveniently and automatically....


Platforms: Windows

License: Shareware Cost: $27.00 USD Size: 2.66 MB Download (573): A-PDF Data Extractor Download

Added: April 10, 2010 | Visits: 714

Bio::AnnotationCollectionI Bio::AnnotationCollectionI is a Perl interface for annotation collections. SYNOPSIS # get an AnnotationCollectionI somehow, eg $ac = $seq->annotation(); foreach $key ( $ac->get_all_annotation_keys() ) { @values = $ac->get_Annotations($key); foreach $value ( @values ) { # value is an...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (89): Bio::AnnotationCollectionI Download

Added: March 12, 2010 | Visits: 856

Bio::Graph::SimpleGraph Bio::Graph::SimpleGraph is a Perl module that can create and manipulate undirected graphs. SYNOPSIS use Bio::Graph::SimpleGraph; my $graph=new SimpleGraph; # read pairs of nodes from STDIN while (<>) { my($node1,$node2)=split; $graph->add_edge($node1,$node2); } my @nodes=graph->nodes;...


Platforms: *nix

License: Freeware Size: 5.6 MB Download (101): Bio::Graph::SimpleGraph Download

Added: June 19, 2010 | Visits: 696

Bio::Phylo::IO 0.17 Bio::Phylo::IO Perl module contains input and output of phylogenetic data. SYNOPSIS use Bio::Phylo::IO; # parsing a tree from a newick string my $tree_string = (((A,B),C),D);; my $tree = Bio::Phylo::IO->parse( -string => $tree_string, # old parser, always adds node labels -format =>...


Platforms: *nix

License: Freeware Size: 143.36 KB Download (91): Bio::Phylo::IO 0.17 Download

Added: June 16, 2010 | Visits: 988

Bio::SAGE::DataProcessing Bio::SAGE::DataProcessing module processes raw serial analysis of gene expression (SAGE) data. SYNOPSIS use Bio::SAGE::DataProcessing; $sage = Bio::SAGE::DataProcessing->new(); # open sequence and quality files open( READS, "library.fasta" ); open( QUAL, "library.qual.fasta" ); #...


Platforms: *nix

License: Freeware Size: 19.46 KB Download (92): Bio::SAGE::DataProcessing Download

Added: August 25, 2010 | Visits: 948

Bio::GMOD Bio::GMOD is a unified API for Model Organism Databases. SYNOPSIS Check the installed version of a MOD use Bio::GMOD::Util::CheckVersions.pm my $mod = Bio::GMOD::Util::CheckVersions->new(-mod=>WormBase); my $version = $mod->live_version; Update a MOD installation use Bio::GMOD::Update;...


Platforms: *nix

License: Freeware Size: 71.68 KB Download (97): Bio::GMOD Download

Added: April 23, 2010 | Visits: 815

Data::Diver Data::Diver is a simple, ad-hoc access to elements of deeply nested structures. SUMMARY Data::Diver provides the Dive() and DiveVal() functions for ad-hoc access to elements of deeply nested data structures, and the DiveRef(), DiveError(), DiveClear(), and DiveDie() support functions....


Platforms: *nix

License: Freeware Size: 8.19 KB Download (87): Data::Diver Download

Released: May 11, 2011  |  Added: May 19, 2011 | Visits: 2.229

A-PDF Form Data Extractor A-PDF Form Data Extractor is a simple utility program that lets you batch export PDF form data to CSV or XML file format. It provide a visual form fields extraction rule editor to verify and define what form fields to be gathered conveniently and automatically. A-PDF Form Data Extractor does...


Platforms: Windows

License: Shareware Cost: $27.00 USD Size: 2.42 MB Download (448): A-PDF Form Data Extractor Download

Released: May 27, 2011  |  Added: July 12, 2011 | Visits: 1.266

Data Masking Suite Easy Data Masking - simple to install, flexible, and self-explanatory. Create test data and mask sensitive data. Orpheus Data Masking Suite is exceptionally easy to use. You don't need IT skills to know how to mask the sensitive data you would like to protect. Try the free demo version of...


Platforms: Windows

License: Freeware Size: 3.65 MB Download (101): Data Masking Suite Download

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