Sequencing

Timina is a Java web-based application for automation of all steps of a genome sequencing project: submission, assembly and annotation of sequences.

VCAKE is a genetic sequence assembler capable of assembling millions of small nucleotide reads even in the presence of sequencing error. This software is currently geared towards de novo assembly of Illumina's Solexa Sequencing data.

About Midi Grasshopper A MIDI and audio sequencing application. A user may create midi files and aiff files for burning on a CD for play back on any CD Player. The Midi Grasshopper uses Apples Audio Units for sound synthesis, or may direct MIDI events to an external tone generator. A user may...


Platforms: Mac

SlideViewer is an automatic picture viewer. Just point SlideViewer at directories containing images, and it will sequentially display the images as a slide-show. Convenient controls enable altering the speed, pausing, going-back, as well as sequencing manually.


Platforms: *nix

It will help program tweening effects, animations, and transitions.It is comprised of 4 key classes: GTween (tweening engine), GTweenTimeline (time control features), GTweenFilters (useful in tweening filters) and GTweeny (light version of GTween).Here are some key features of "GTween":dlTE...


Platforms: Flash

WRITESCF writes SCF formatted files.SCF format files are used to store data from DNA sequencing instruments. This version of WRITESCF only adds the raw traces to the SCF files, it does not write the bases or scores.


Platforms: Matlab

AdrenaLinn Sync is a software plug-in from Roger Linn Design that provides the same unique beat-synced filter modulation and sequencing effects of our AdrenaLinn III guitar pedal, plus quite a bit more. Though intended for guitar, it adds fascinating rhythmic tonal effects to any instrument or...


Platforms: Mac

Consequence - The Chord Synquencer is a "chord groovebox" with a surprising depth of possibilities while being easy to use due to an intuitive workflow. Chords are alternated, split up to custom arpeggios and turned into leg-driving basslines, amazing melodies or dreamy sound textures. The...


Platforms: Mac

Allgorhythm is a probabilistic step-sequencer for Native Instruments Reaktor 5. It has a simple interface, that produces complex loops that never repeat. Use it to control other softsynths, hardware synths, fx and drum machines. Features # 4 track sequencer # MIDI Out # Probability sequencing #...


Platforms: Mac

Cirklz is a probabilistic step-sequencer for Native Instruments Reaktor 5. It has a simple interface, that produces complex loops that never repeat. Use it to control other softsynths, hardware synths, fx and drum machines. Features # 4 track sequencer # MIDI Out # Probability sequencing # Easy...


Platforms: Mac

Welcome to the SRMA home page. SRMA is a short read micro re-aligner for next-generation high throughput sequencing data. Sequence alignment algorithms examine each read independently. When indels occur towards the ends of reads, the alignment can lead to false SNPs as well as improperly placed...


Platforms: Mac

DNADynamo sequence analysis software is easy to use. It's user interface is focused on your DNA sequences, proteins and restriction enzyme sites. Sequencing data, oligonucleotide sequences, DNA/Protein annotations and notes can be added to each sequence. Information is accessible whenever it is...


Platforms: Mac

Ridom TraceEdit is a cross-platform graphical DNA trace viewer and editor. TraceEdit displays the chromatogram files from Applied Biosystems automated sequencers and files in the Staden SCF format. Incorrect base calls can be edited and saved. TraceEdit is freely available and designed to operate...


Platforms: Mac

dnaLIMS is a state-of-the art web based laboratory information management system used to track and manage core facility workflow in high throughput environments. Its database and process flow can be customized to your core facility requirements. dnaLIMS process flow is used to capture DNA...


Platforms: Mac

The whole genome shotgun approach to genome sequencing results in a collection of contigs that must be ordered and oriented to facilitate efficient gap-closure. We present a new tool OSLay that uses synteny between matching sequences in a target assembly and a reference assembly to layout the...


Platforms: Mac

Olorin is an interactive filtering tool for next generation sequencing data coming from the study of large complex disease pedigrees. Olorin, is a tool which integrates gene flow output from Merlin and next generation sequencing data. Users can interactively filter and prioritize variants based...


Platforms: Mac

Genomecomb is a package for the analysis of complete genome data. It can be used to compare, annotate and especially filter the results of complete genome sequencing.


Platforms: *nix

ALEXA-Seq is a method for using massively parallel paired-end transcriptome sequencing for 'alternative expression analysis'. Features . Alternative expression analysis . WTSS/RNA-Seq library quality assessment . Gene expression analysis . Novel transcript discovery . Visualization of...


Platforms: *nix

Tracetuner is a tool for base and quality calling of trace files from DNA sequencing instruments. Originally developed by Paracel, this code base was released as open source in 2006 by Celera.


Platforms: *nix

CB-Commander is a plugin based tool that tries to integrate high throughput sequencing algorithms. It allows researchers to design and execute their experiments through a user friendly interface.


Platforms: *nix