Repetitive Dna Sequences

Bio::Factory::SequenceFactoryI is a Perl interface that allows for generic building of sequences in factories which create sequences (like SeqIO). SYNOPSIS # do not use this object directly it is an interface # get a Bio::Factory::SequenceFactoryI object like use Bio::Seq::SeqFactory; my...

Kopete Massive Messenger is a Kommander script that lets you send repetitive messages to your Kopete contacts.. Kopete Massive Messenger KDE-Apps.org Community Portal for KDE Applications Software Office Multimedia Graphic Network Printing Education Games Development Administration Scientific...

Workrave project can assists you in the recovery and prevention of Repetitive Strain Injury (RSI). The program frequently alerts you to take micro-pauses, rest breaks and restricts you to your daily limit. Please refer to the feature comparison for a complete list of features, and how the...


Platforms: *nix

Peptide::Pubmed is a Perl module that can extract peptide sequences from MEDLINE article abstracts. SYNOPSIS use Peptide::Pubmed; $parser = Peptide::Pubmed->new; $in = { PMID => q[15527327], Author => q[Doe JJ, Smith Q], Journal => q[J Biological Foo. 2004;8(2):123-30.], Title => q[Foo,...


Platforms: *nix

The DNA Molar Converter widget is a Dashboard widget that allows to perform molar conversions for nucleic acids according to size.


Platforms: Mac

Elecard StreamEye Studio is a set of powerful applications designed for media professionals and prosumers to analyze video quality, troubleshoot problems in the encoded stream for further video compression optimization and ensure compliance to the video standards. The program displays frames,...


Platforms: Windows, Other

The Genome Positioning System (GPS) is a software tool to study protein-DNA interaction using ChIP-Seq data. GPS builds a probabilistic mixture model to predict the most likely positions of binding events at single-base resolution. GPS is a Java software, so it runs on multiple platforms,...


Platforms: Windows

iMethy is a handy, easy to use genome-wide DNA methylation analysis and visualization application based on next generation sequencing. Firstly, it holds the command-line pipeline to align the bisulfite-treated short read, identify the methylcytosine at CG/CHG/CHH sites, detect the methylation...


Platforms: Windows

ClaMS is a handy application specially designed to offer you a sequence composition-based classifier for metagenomic sequences. ClaMS works by capturing signatures of each sequence based on the sequence composition. Each sequence is modeled as a walk in a de Bruijn graph with underlying Markov...


Platforms: Windows

Primer Design is a simple utility created in order to design DNA primers for mutagenesis in the BGME lab (JHU). It allows users to select or enter background sequence and add current and new mutations. During the design process, users are presented with various updating checks to guide them.


Platforms: Windows

Seqwog is a small, command prompt application specially designed to help you find frequent sequences without gaps in their occurrences. That is, the items of the frequent subsequences must always be consecutive in the underlying transactions. There must not be other items interspersed between...


Platforms: Windows

Have you ever needed to generate easy to read Quality Reports for your DNA sequencing? Have you ever needed to sort your DNA trace files by quality? Have you ever needed to change the comments tag in your Chromatograms? If so, this software suite is for you. This bundle includes: Mac Sequence...


Platforms: Mac

A Molecular Biology software that provides tools with an intuitive interface to assists you in DNA cloning, sequence analysis and visualization. Serial Cloner 2.1 handles Features/Annotations and now allows to define, import and export, customized lists of Features. User can annotate any sequence...


Platforms: Mac

A minimalistic tool for molecular phylogenetics able to recover phylogenies from nucleotide sequences. PhyloCoco uses the likelihood or the minimum evolution criterion, and automatically selects the best substitution model of DNA evolution for the dataset analyzed.PhyloCoco key-features are: -...


Platforms: Mac

RSIGuard helps you avoid getting a repetitive strain injury (RSI) from computer use. RSIGuard's BreakTimer feature contains a realistic strain model that gives stretch break suggestions when they're needed, and doesn't bother you when they're not. The AutoClick feature is an artificially...


Platforms: Windows, Mac

BSmapper - Sequence mapper for bisulfite sequencing reads for DNA methylation studies. Can handle Sanger and 454 reads for mapping to whole genomes or target regions.


Platforms: Mac

CisPlusFinder predicts cis-regulatory modules based on perfect local ungapped sequences using comparative sequence data from multiple organisms. An overview of the CisPlusFinder can be found in the flowchart.tif file and is described in the following publication: Pierstorff, N., C.M. Bergman &...


Platforms: Mac, BSD

A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS Windows.


Platforms: Mac

aniMate offers an extremely easy approach to building animation sequences that is ideal for beginners, yet capable of producing professional results. Using aniBlocks, animated behaviors such as dancing, walking, fighting, and gesturing are simply dragged from the aniBlock library and dropped into...


Platforms: Mac

RSIGuard helps you avoid getting a repetitive strain injury (RSI) from computer use. RSIGuard's BreakTimer feature contains a realistic strain model that gives stretch break suggestions when they're needed, and doesn't bother you when they're not. The AutoClick feature is an artificially...


Platforms: Mac