Recapitulates Ontology

openDICOM.NET software implements a new approach towards DICOM (Digital Imaging and Communications in Medicine) libraries. DICOM is a worldwide standard in Medical IT and is provided by the National Electrical Manufacturers Assocation (NEMA). This standard specifies the way medical images and...

Bio::OntologyIO::simplehierarchy is a base class parser for simple hierarchy-by-indentation type formats. SYNOPSIS use Bio::OntologyIO; # do not use directly -- use via Bio::OntologyIO my $parser = Bio::OntologyIO->new ( -format => "simplehierarchy", -file => "pathology_terms.csv",...

Vector Visuals provides an easy-to-use, object-based API for creating and manipulating Java2D-rendered shapes and images. The project features object embedding, dynamic connectors, and multithreaded task support. Vector Visuals has been downloaded thousands of times, and is already in use in a...


Platforms: *nix

Platypus Wiki provides a semantic Wiki Wiki Web. Platypus Wiki is an enhanced Wiki Wiki Web with ideas taken from Semantic Web. It offers a simple user interface for creating Wiki page plus metadata according to W3C standards. Weve chosen HTMLarea v3.0rc1 as a WYSIWYG editor for creating...


Platforms: *nix

GO::View is a Perl module that creates a gif or png image for visualizing the GO DAG. This perl module generates a graphic that displays the parent and child relationships of a selected GO term. It also provides the visualization for the GO::TermFinder perl module created by the Stanford...


Platforms: *nix

FastSemSim is specially designed as a handy Python-based efficient implementation of a couple of semantic similarity measures. The main target of the project is to enable fast and easy calculation of similarity between proteins and genes using the Gene Ontology


Platforms: Windows

MEFIT, also known as the Microarray Experiment Functional Integration Technology is developed as a system for microarray integration. Given any amount of microarray data, it predicts the probability of pairwise functional relationship for any gene pair within individual biological functions....


Platforms: Windows

Key Concepts Extraction was specially developed in order to help you perform key-concept extractions from ontologies. In order to use the KCE API you have to import the available JAR packages into your project. The packages you have to import are: · kce.jar · taxonomy.jar ·...


Platforms: Windows

jMapper was specially designed as an accessible component created using the Java programming language. It was built in order to allow you to automatically detect metaphors / analogies between two domains (ontologies).


Platforms: Windows

Apolda, also known as Automated Processing of Ontologies with Lexical Denotations for Annotation was built as a plugin for GATE. The Apolda processing resource (PR) annotates a document like a gazetteer, but takes the terms from an (OWL) ontology rather than from a list. Apolda searches the...


Platforms: Windows

FluentEditor for OWL is comprehensive tool for editing and manipulating complex ontologies using Controlled Natural Language. Fluent editor provides alternative to XML-based OWL editors that is better suitable for human users. It's main feature is using Controlled English as a knowledge modeling...


Platforms: Windows

CRML - Conflict Resolution Markup Language - http://www.equiforum.org - is an open source innitiative to develop an XML based Semantic Web ontology (RDF, OWL) for researchers interested in peace to create a standard way of collecting and sharing informa


Platforms: Windows, Mac, Linux

The EURP OntoLookup is a CREOLE plugin for GATE http://www.gate.ac.uk/ which uses an OWL ontology for lookup. It has a very fast implementation based on a tree of hash maps.


Platforms: Windows, Mac, Linux

The JMX Extension package provides the capability to manage selective Protg OWL API remotely using the JMX library. This package allows distributed software components to retrieve, contribute, and reason about information in single OWL ontology.


Platforms: Windows, Mac, Linux

Mimosa is a modeling and simulation platform, covering the process from building conceptual models to running the simulations. The specification uses ontologies and an extensible set of formalisms for the dynamics. The simulation kernel is based on DEVS. Features: * Ontology editor for...


Platforms: Mac

Framework for text mining, data integration and data analysis. Keywords: ontology and graph alignment, relation mining, warehouse, semantic database integration, bioinformatics, systems biology, microarray, Java.


Platforms: Windows, Mac, Linux

OntoCardio is an initiative to build ontologies for the legacy Cardio Database (Resource of bioinformation on cardiovascular diseases). SMI's Protege and its OWL plug-in has been adopted as the ontology construction and programming framework.


Platforms: Windows, Mac, Linux

Osprey is a software platform for visualization of complex interaction networks. Osprey builds data-rich graphical represetations from Gene Ontology (GO) annotated interactions maintained by the BioGRID.


Platforms: Windows, Mac, Solaris, Linux

PDKB is an Artificial Intelligence Knowledge Bank of commonsense rules and facts. It is based on the Cyc Upper Ontology and the MELD language.


Platforms: Windows, Mac, Linux

S-Match is a semantic matching framework. S-Match takes any two tree like structures (such as database schemas, classifications, lightweight ontologies) and returns a set of correspondences between those tree nodes which semantically correspond to one another. S-Match contains implementations...


Platforms: Windows, Mac, Linux