Proteome

There are many formats for mass spectrometry data. The Proteome Commons Project http://www.proteomecommons.org provides a library of functions for reading many of the widely used formats. By using the MATLAB-Java interface you can leverage the functions in the Proteome Commons IO library to allow...


Platforms: Matlab

pIcarver is a tool to visualize theoretical distributions of peptide pI on a given pH range, and proposes a fractionation scheme that generates fractions with similar peptide frequencies. This tool has been developed as a service of the Bioinformatics Core Facility for Proteomics, within a...


Platforms: Mac

A powerful and user-friendly graphical software designed to conduct large scale exploration of biological sequence databanks and related information (functional, taxonomy, pathways, mutations, etc). KoriBlast can be used for a wide range of applications in genomics and proteomics, such as: full...


Platforms: Mac

MALDIPepQuant is a tool to quantify MALDI peptides (SILAC) from Phenyx output. This tool has been developed as a service of the Bioinformatics Core Facility, within a collaboration between the Proteome Informatics Group from the Swiss Institute of Bioinformatics (SIB) and the Biomedical...


Platforms: Mac

HaMSTR is a Hidden Markov Model based search tool to screen EST sequence data for the presence of putative orthologs to a pre-defined set of genes. A-priori knowledge about orthology-relationships among genes in different sets of reference species is extracted from the Inparanoid-Database....


Platforms: Mac