Primer

Primer Design is a simple utility created in order to design DNA primers for mutagenesis in the BGME lab (JHU). It allows users to select or enter background sequence and add current and new mutations. During the design process, users are presented with various updating checks to guide them.

The February 2011 release of the SharePoint and Azure Development Kit is essentially a developer primer to help you ramp up on different ways to integrate SharePoint and Azure. SharePoint and Azure Development Primer toolkit includes four modules with PowerPoint decks, hands-on labs and source...

This is the high throughput PCR primer design software that is used at the J. Craig Venter Institute. See: Li K, et al. 'Novel computational methods for increasing PCR primer design effectiveness in directed sequencing'. BMC Bioinformatics 2008, 9:191.


Platforms: Windows, Mac, Linux

RAPD Primer Design from Metagenomes (RPD-M) scans metagenome sequences identifying and determining relative frequency of candidate primers for Random Amplification of Polymorphic DNA (RAPD) assays.


Platforms: Mac, BSD, Linux

Bio::MCPrimers is a Perl module to create molecular cloning PCR primer pairs for a given gene so that the gene can be directionally inserted into a vector. Solver is generic, restriction enzymes and their order in the vector are specified in the caller. XPORT SUBROUTINES sub find_mc_primers...


Platforms: *nix

Search oligonucleotide in multiple sequence files. Primer Validator is a scientific utility which allows researchers to verify whether the designed primer is unique for the gene of interest or not. It will be useful if that gene is a member of a large superfamily. In addition, researchers may...


Platforms: Mac

The FastPCR software was developed to be an integrated tools environment that provides comprehensive facilities for designing primers for most PCR applications including standard, long distance, inverse, real-time, multiplex, unique and group-specific; overlap extension PCR (OE-PCR)...


Platforms: Windows, XP, 2003, Windows Vista, XPX64, 7, 7x64

ORFer reads the NCBI GenBank XML sequence format and extracts open reading frames for proteins. Sequences can be requested by GI or accession number. ORFprimer is an extended software package for high throughput PCR primer design for biological sequences


Platforms: Windows, Mac, BSD, Solaris, Linux

Shareware-Marketing.net offers this free e-book to all shareware authors that wish to benefit from our expertise and promote their software in the most effective manner. The book is a continuous work in progress as it is a collection of articles that are published daily in the...


Platforms: Windows, Windows CE

Free, Creating wealth through quantum physics. There are just a few simple steps that when done consistently, daily, will change your life dramatically.... You will be amazed and astonished at how you can create your financial freedom. Get this free downloads today. This amazing program will...


Platforms: Windows, Windows CE

Freeware DNA cloning, restriction analysis, primer site analysis and visualisation software. pDRAW32 is being developed as a freetime hobby project and it is far from finished, but as it has reached a point where it could be helpfull for many labs, it is now available to the scientific community....


Platforms: Windows

OLIGO is a multi-functional program that searches for and selects oligonucleotides from a sequence file for polymerase chain reaction (PCR), DNA sequencing, site-directed mutagenesis, and various hybridization applications. It calculates hybridization temperature and secondary structure of...


Platforms: Mac

This program has 144 pre-made 'missing angle measure' problems. The problems are divided into six categories: complementary angles, supplementary angles, non-right triangles, right triangles, parallel lines with transversal, and quadrilateral angles. The program is suitable for grades five...


Platforms: Mac

For the design of long oligos for DNA microarrays, primer pairs for PCR amplifications, siRNAs, and more. The user interface emphasizes usability and is aimed at assisting researchers for a painless, rapid, automated, and reliable design. - A bug in the export to FASTA and Excel has been fixed.


Platforms: Mac

IMP is an automated tool for intron-flanking primer design based off of Expressed Sequence Tags (ESTs). It's intended for use in species with limited to no genomic sequence data available.


Platforms: Mac, BSD, Linux

This book disassembles the entire finite element method for civil engineering students and professionals, detailing its supportive theory and its mathematical and structural underpinnings in the context of elastic structures and the principle of virtual work.For a full book description and...


Platforms: Matlab

Design primers based on length, melting temperature, GC content, hairpins, dimerization, nucleotide repeats, and 3' GC clamp criteria.Import data from files or from Genbank.


Platforms: Matlab

msatcommander is a python program written to locate microsatellite (SSR, VNTR, &c) repeats within fasta-formatted sequence or consensus files. msatcommander will search for all di-, tri-, tetra-, penta-, and hexa-nucleotide repeats (with options to search for fewer repeat types and combinations...


Platforms: Mac

A GUI program to create the plasmid database forms for BGME lab. This program presents user with a data entry form for entering plasmid information and automatically converts DNA sequence to protein, aligns it, and creates text output file.


Platforms: Mac

provides comprehensive analysis of sequence with standard and mixed bases, as well as DNA, RNA, methylated, locked and phosphorothioated bases; tool will calculate the physical properties of the sequence including length, CG content, melting temperature, molecular weight, the extiction...


Platforms: Mac