Predicting Molecular Geometry

BRL-CAD project is a powerful Constructive Solid Geometry (CSG) solid modeling system. BRL-CAD includes an interactive geometry editor, ray tracing support for rendering and geometric analysis, network distributed framebuffer support, image-processing and signal-processing tools. The entire...

Bio::MCPrimers is a Perl module to create molecular cloning PCR primer pairs for a given gene so that the gene can be directionally inserted into a vector. Solver is generic, restriction enzymes and their order in the vector are specified in the caller. XPORT SUBROUTINES sub find_mc_primers...

LAMMPS project is a Molecular Dynamics Simulator. LAMMPS has potentials for soft materials (biomolecules, polymers) and solid-state materials (metals, semiconductors) and coarse-grain systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the mesoscale...


Platforms: *nix

GeoGebra project is a dynamic mathematics software that joins geometry, algebra, and calculus. Two views are characteristic of GeoGebra: an expression in the algebra window corresponds to an object in the geometry window and vice versa. GeoGebra - Dynamic Mathematics for Schools


Platforms: *nix

TrigAid allows a student to quickly perform math and trigonometry related calculations with ease. The application has a geometry section, vectors, conics, matrices, axes rotation, linear equation, triangulator, sequences and much, much more. In addition, the application has a unit converter and a...


Platforms: Mac

CopanMobile for Pocket PC is a very functional and easy-to-use geomatics engineering tool for computing and managing plane surveying and mapping coordinates. It does numerous coordinate geometry (COGO) calculations, processes and adjusts raw field survey data, computes and adjusts map...


Platforms: Pocket PC, Windows

Copan Pro -- for Windows 98, NT, 2000, ME, XP, Vista, or 7 -- is a very functional and easy-to-use desktop/netbook geomatics engineering tool for computing and managing plane land surveying and mapping coordinates, and drafting survey maps and plans. It does numerous coordinate geometry...


Platforms: Windows

GEUP 3D is an interactive solid geometry software for math calculation and visualization. It allows to create dynamic and general constructions/applications visually by defining math elements. GEUP 3D allows the modification of the construction visually (directly in screen) and it calculates each...


Platforms: Windows

JavaView is a simple, easy to use application designed to offer you a 3D geometry viewer and a mathematical visualization software. The open API of JavaView enables a smooth integration as 3D viewer and advanced visualization toolkit into commercial software. Note: In order to use this...


Platforms: Windows

Open3DALIGN is an open-source software aimed at unsupervised molecular alignment. Open3DALIGN is a command-line tool which is operated by means of a few commands which can be entered interactively from a command prompt, read from a batch script or piped through standard input. If PyMOL is...


Platforms: Windows

BALLView is our standalone molecular modeling and visualization application. Furthermore it is also a framework for developing molecular visualization functionality. It is available free of charge under the GPL for Linux, Windows and MacOS. It provides fast OpenGL-based visualization of...


Platforms: Windows

Gain a Production Edge!quick3D Geometry is a 3D file format viewing and converting solution, and is an essential tool for anyone working with 3D graphics or 3D files. It supports viewing and geometry translation for an expansive range of 3D file formats. quick3D's real-time 3D viewer displays...


Platforms: Windows

The Ascalaph Quantum package provides interfaces to ab initio quantum mechanical packages NWChem, CP2K and PC GAMESS / Firefly. Quantum calculations are performed using the PC GAMESS program. FEATURES: Energy calculations : · Energy calculation mode is controlled by selecting the basis...


Platforms: Windows

Geneious is a useful, unique and easy-to-use software system which has been designed to greatly speed up and simplify the research in molecular biology and biochemistry. Geneious is a cross-platform research engine for the retrieval, organization and analysis of biomolecular data that allows...


Platforms: Windows

Geneious is a useful, unique and easy-to-use software system which has been designed to greatly speed up and simplify the research in molecular biology and biochemistry. Geneious is a cross-platform research engine for the retrieval, organization and analysis of biomolecular data that allows...


Platforms: Windows

Open3DGRID is an application designed for high-throughput generation of molecular interaction fields or MIFs. Open3DGRID can generate steric potential, electron density and MM / QM electrostatic potential fields; furthermore, it can import GRIDKONT binary files produced by GRID and CoMFA / CoMSIA...


Platforms: Windows

Open3DGRID is an application designed for high-throughput generation of molecular interaction fields or MIFs. Open3DGRID can generate steric potential, electron density and MM / QM electrostatic potential fields; furthermore, it can import GRIDKONT binary files produced by GRID and CoMFA / CoMSIA...


Platforms: Linux

Open3DGRID is an application designed for high-throughput generation of molecular interaction fields or MIFs. Open3DGRID can generate steric potential, electron density and MM / QM electrostatic potential fields; furthermore, it can import GRIDKONT binary files produced by GRID and CoMFA / CoMSIA...


Platforms: Mac

Open3DGRID is an application designed for high-throughput generation of molecular interaction fields or MIFs. Open3DGRID can generate steric potential, electron density and MM / QM electrostatic potential fields; furthermore, it can import GRIDKONT binary files produced by GRID and CoMFA / CoMSIA...


Platforms: Windows

Open3DALIGN is an open-source software aimed at unsupervised molecular alignment. Open3DALIGN is a command-line tool which is operated by means of a few commands which can be entered interactively from a command prompt, read from a batch script or piped through standard input. If PyMOL is...


Platforms: Mac