Predicting Molecular Geometry

MOPlot is a handy visualization application specially designed for fast molecular orbitals plotting from the outputs of the Gaussian 03/98/94, Molcas, Gamess/US quantum chemical calculation packages. This Molecular Orbital Plotting Program will prove to be easy-to-use and very efficient. MOPlot...

This software aims help students of analytic geometry courses by visualizating several key concepts.

PFMD performs a Molecular Dynamics simulation of some polarizable fluids at the liquid state by means of a dissociable potential. Supported molecules are H2O (water) and MX3, where M is a metal among Al, Fe, or Ga and X is a halogen among Cl, Br, or I.


Platforms: Windows, Mac, Linux

The Protein Geometry Database hosts the development code for a flexible database for searching protein geometry, as well as a library for accessing this data for protein modeling & refinement programs.


Platforms: Windows, Mac, Linux

PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source PyMOL is free to everyone!


Platforms: Windows, Mac, BSD, Solaris, Linux

A common way to create new compound widgets is to inherit Frame, create everything you need inside it and pack this base Frame on your application.This script is an alternative to this method, that sets geometry methods and options from a wiget to another.


Platforms: Windows, Mac, *nix, Python, BSD Solaris

This Program is the implementation of the paper"An Improved Hybrid Model for Molecular Image Denoising"Original Paper can be downloaded from : www.springerlink.com/index/g31k52277220rvu8.pdfCopies of the paper available...


Platforms: Matlab

NanoVis (beta version) allows to visualize any atomistic structure by reading a user defined file. The supported formats are "gen" and "xyz". There are two display modes: normal and "spacefill". In the zip file, with the .m file, there are two examples of structure and a file containing the atoms...


Platforms: Matlab

This file uses import_stl_fast to pull in model geometry and write an appropriate .facet file. If you require the ability to import binary stl files, import_stl_fast can be replaced with another importer from the file exchange.The current version does not have inputs for different materials.


Platforms: Matlab

This software is documented in the Journal of Structural Geology article:"Fold Geometry Toolbox - Automated determination of fold shape, shortening, and material properties"by Marta Adamuszek, Daniel Walter Schmid, and Marcin Dabrowski. FGT is a program to analyze fold geometry in 2D. This...


Platforms: Matlab

This is a Java program that calculates commonly used parameters related to airplane wing geometry such as area, taper ratio, aspect ratio, sweep, etc. As an aerospace engineer involved in airplane design, I find that I'm calculating these parameters all the time, so I wrote this program to help...


Platforms: Mac

Ascalaph Graphics is a program for molecular graphics and dynamics, as well as a graphical shell to package of molecular dynamics MDynaMix. Features: Molecular graphics Multiple windows Two cameras per model CPK, Wire frame, Stick, Ball and Stick and CPK Wire frame styles Molecular...


Platforms: *nix

Interactive geometry software for performing interactive calculations, visualization and modeling in math, science and engineering. The construction concept and the interactive visualization are the basis of the program. Designed to be easy-to-use, it provides a powerful mathematical platform...


Platforms: Windows, Windows 7, Windows Server

Get into the pilot seat and learn about volume and surface area while blasting away space debris to save your ship! Galactic Geometry is a 3D educational game that offers an engaging environment for serious learning about geometric figures. As obstacles hurtle toward them, students must calculate...


Platforms: Windows

CHEMIX School is an educational tool for learning chemistry. It is geared toward college-level chemistry, but is also appropriate for high-school students, chemists, and teachers. It is equipped with a periodic table containing history, 19 physical properties + number of stable isotopes,...


Platforms: Windows, Windows 8, Windows 7, Windows Server

Copan for Windows desktop/netbook is a very functional and easy-to-use geomatics engineering tool for computing and managing plane land surveying and mapping coordinates. It does numerous coordinate geometry (COGO) calculations, processes and adjusts raw field survey data, computes and...


Platforms: Windows

Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. This project offers a flexible rendering engine and a powerful plugin architecture. The main concept behind Avogadro...


Platforms: *nix

Tk::SplitFrame is a geometry manager for scaling two subwidgets. SYNOPSIS use Tk; use Tk::SplitFrame; my $MainWindow = MainWindow->new(); my $SplitFrame = $MainWindow->SplitFrame ( -orientation => vertical, -trimcolor => #c7c7c7, -background => white, -sliderposition => 60,...


Platforms: *nix

Tk::Gpack module contains abbreviated geometry arguments for pack, grid and place geometry managers. This module exports four functions for each of the different geometry mananers into the Tk namespace. These functions provide a variety of styles for controlling the indevidual geometry of one,...


Platforms: *nix

powerPlant is a geometry generator and editor. powerPlant is specially suitable to generate terrain and plant models. The geometry generation is based on custom implementations of L-Systems, Turtle-Interpretation and the Diamond-and-Square algorithm. powerPlant is composed of a Java application...


Platforms: *nix