Nifti

Please always check http://www.rotman-baycrest.on.ca/~jimmy/NIfTI for detail descriptions and latest updates.If you are confused by the Left / Right of an ANALYZE image, you can consult http://www.rotman-baycrest.on.ca/~jimmy/UseANALYZE.htmYou may also want to read... Platforms: Matlab

Niftilib is a set of i/o libraries for reading and writing files in the nifti-1 data format. nifti-1 is a binary file format for storing medical image data, e.g. magnetic resonance image (MRI) and functional MRI (fMRI) brain images. Niftilib currently has C, Java, MATLAB, and Python libraries;... Platforms: Mac

3DBrainExplorer is designed as lightweight, Open Source and OpenGL-based 3D renderer for scientific visualization of volumetric data or NIfTI. 3DBrainExplorer features real-time image manipulation, AAL brain labels (Tzourio-Mazoyer et al., 2002), SPM5 statistical images and stereo display. Platforms: Windows

DSI Studio is a software for diffusion MRI processing, including DTI, DSI, and QBI reconstruction as well as fiber tracking. Among the features of DSI Studio are distributed computing and multithread calculation to generate tractographies as well as the ultrafast 3D engine based on DirectX.... Platforms: Windows

This project, developed at University College London, contains programs to perform rigid, affine and non-linear registration of nifti or analyse images. Two versions of the algorithms are included, a CPU- and a GPU- (using CUDA) based implementation. Platforms: Windows, Mac, Linux

GingerALE is the BrainMap application that is used to perform an ALE meta-analysis on a group of coordinates in Talairach or MNI space. GingerALE can also be used to convert coordinates between MNI and Talairach spaces using the icbm2tal transform. The ALE meta-analysis method was initially... Platforms: Mac

MIView is a powerful yet easy to use medical image viewer based on OpenGPL designed to include useful tools such as a DICOM anonymizer and format conversion utility. MIView can read DICOM, Analyze/Nifti, and raster images, and can write Analyze/Nifti and raster images. It can also read and... Platforms: Windows

MIView is a powerful yet easy to use medical image viewer based on OpenGPL designed to include useful tools such as a DICOM anonymizer and format conversion utility. MIView can read DICOM, Analyze/Nifti, and raster images, and can write Analyze/Nifti and raster images. It can also read and... Platforms: Windows

Glass Brain is a tool specifically designed for displaying neural connections within the human brain given multidimensional scan data and a connectivity graph. This project benefits from Qt, VTK, ITK, and CMake. Features . Loads NIFTI datasets . Can save large format OpenGL renders as... Platforms: *nix

This function ReadData3D allows the user to open medical 3D files. It supports the following formats : Dicom Files ( .dcm , .dicom ) V3D Philips Scanner ( .v3d ) GIPL Guys Image Processing Lab ( .gipl ) HDR/IMG Analyze ( .hdr ) ISI Files ( .isi ) NifTi ( .nii ) RAW files ( .raw , .* ) VMP... Platforms: Matlab

Conceived for functional Magnetic Resonance Imaging, create_mosaic may also be useful for DWI or other applications which create image time-series Most fMRI programs use 4D matrices (x,y,z,t) in NIfTI format. It can be useful to reduce the number of dimension from 4 to 3 by tiling all slices (z)... Platforms: Matlab

This simple function allows the user to view the saggital, coronal and horizontal slices of a certain .nii format MRI scan. All you need to do is enter the x, y and z coordinates of a certain point to be able to view the slices that pass through that certain point. Colormap is set automatically... Platforms: Matlab

This function can be used to interactively view any kind of 2D,3D and 4D image volumes like CT and MRI. Allowing segmentation and distance measurements or ROI selection in 2D slices.It includes Maximum intensity projections (MIP), Volume Rendering (VR) , Slice render, and colored and Phong shaded... Platforms: Matlab

MRIConvert now supports Enhanced MR image objects. Try MRIConvert 2.0 for NIfTI output, Analyze 7.5 output, and automatic generation of diffusion gradient files for Siemens Syngo scanners, Philips, and some GE scanners. The latest revision is 200, dated 12/21/2010. Revision history To install... Platforms: Mac