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Ncbi Pubmed software
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Ncbi Pubmed

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Released: September 07, 2012  |  Added: September 07, 2012 | Visits: 451

CopyCat for Linux CopyCat is a handy application specially designed to offer users an easy and fast access to cophylogenetic analyses. It incorporates a wrapper for the program ParaFit, which conducts a statistical test for the presence of congruence between host and parasite phylogenies. CopyCat offers various...



Platforms: Linux

License: Freeware Size: 16 MB Download (440): CopyCat for Linux Download

Released: September 02, 2012  |  Added: September 02, 2012 | Visits: 449

CopyCat for Mac OS X CopyCat is a handy application specially designed to offer users an easy and fast access to cophylogenetic analyses. It incorporates a wrapper for the program ParaFit, which conducts a statistical test for the presence of congruence between host and parasite phylogenies. CopyCat offers various...





Platforms: Mac

License: Freeware Size: 16 MB Download (431): CopyCat for Mac OS X Download

Added: May 10, 2013 | Visits: 397

PerlPrimer PerlPrimer is a free, open-source GUI application written in Perl that designs primers for standard PCR, bisulphite PCR, real-time PCR (QPCR) and sequencing. It aims to automate and simplify the process of primer design.PerlPrimer's current features include the following: - Calculation of...


Platforms: *nix, Perl, BSD

License: Freeware Download (55): PerlPrimer Download

Released: October 24, 2012  |  Added: October 24, 2012 | Visits: 638

BlastViewer BlastViewer provides an interactive graphical user interface for the analysis of the reports produced by the BLAST sequence database search system. BlastViewer is an easy to use software designed for everyday biological sequence analysis relying on BLAST. It allows an easy visualisation and...


Platforms: Mac, Java 1.5 or later

License: Freeware Size: 7.5 MB Download (61): BlastViewer Download

Released: September 23, 2012  |  Added: September 23, 2012 | Visits: 382

BibDesk For use with BibTeX and (la)TeX, BibDesk is a GUI front-end for managing BibTeX databases in their original .bib form. Search, organize, and cite with drag n' drop. Publish bibliographies to the web as RSS XML.


Platforms: Mac

License: Freeware Size: 8 MB Download (46): BibDesk Download

Released: October 10, 2012  |  Added: October 10, 2012 | Visits: 498

Evidence Based OMT Evidence Based OMT is a powerful clinical reference and learning tool for any student, clinician or educator involved in the practice or the teaching of manipulative/manual therapy for musculoskeletal disorders. A comprehensive mobile companion providing manipulative techniques for the 9...


Platforms: Mac

License: Commercial Cost: $99.99 USD Size: 983 MB Download (48): Evidence Based OMT Download

Added: May 10, 2013 | Visits: 389

JabRef 2.4b JabRef is an open source bibliography reference manager. The native file format used by JabRef is BibTeX, the standard LaTeX bibliography format. JabRef runs on the Java VM (version 1.5 or newer), and should work equally well on Windows, Linux and Mac OS X. Bibliographies generated by LaTeX and...


Platforms: Windows, Mac, *nix, Java, BSD Solaris

License: Freeware Download (57): JabRef 2.4b Download

Added: May 10, 2013 | Visits: 436

OnCite OnCite is the University College London's online publications database, implemented in MySQL and PHP. For an indication of scale: UCL's database contains (at the time of writing) over 74,000 publications records, 3,700 users, 120 departments, and over a hundred administrators. Features -...


Platforms: Windows, Mac, *nix, PHP, BSD Solaris

License: Freeware Download (55): OnCite Download

Added: May 10, 2013 | Visits: 693

Perl Entrez Gene Parser This program is a parser that abstract a data structure from a given Entrez Gene record, and users of the parser can decide what to do/extract from the data structure. Perl Entrez Gene Parser project provides Perl parsers for NCBI's Entrez Gene based on regular expression, Parse::RecDescent,...


Platforms: Windows, Mac, *nix, Perl, BSD Solaris

License: Freeware Download (63): Perl Entrez Gene Parser Download

Added: March 24, 2013 | Visits: 466

MGWT MGWT: Identification of protein coding regions using the ModifiedGabor-wavelet transform.Sequence of test:F56F11.4.fasta (included into the zip file)http://www.ncbi.nlm.nih.gov/entrez/viewer....de&val=AF099922http://www.vision.ime.usp.br/~jmena/projec...ome_results/F5/References:[1] J. P....


Platforms: Matlab

License: Freeware Size: 51.2 KB Download (49): MGWT Download

Added: July 11, 2013 | Visits: 400

GUI for Basic Local Alignment Search Tool (BLAST) NCBI has an implementation of BLAST algorithm on their website at www.ncbi.nlm.nih.gov/BLAST, which is good if you want to query short DNA or protein sequence against various sequence databases. The problem arises when large sequences need to be BLAST'ed against a sequence database or against...


Platforms: Matlab

License: Freeware Size: 10 KB Download (40): GUI for Basic Local Alignment Search Tool (BLAST) Download

Matlab program for calculating EUD-based NTCP and TCP in external beam radiotherapy EUDMODEL(DVH), where DVH is a 2 column matrix corresponding to the cumulative, not differential, dose volume histogram. The 1st column corresponds to increasing absolute dose or percentage dose values, and the 2nd column to the corresponding absolute or relative volume value. The matrix must have...


Platforms: Matlab

License: Shareware Cost: $0.00 USD Size: 10 KB Download (57): Matlab program for calculating EUD-based NTCP and TCP in external beam radiotherapy Download

Added: May 16, 2013 | Visits: 545

Taxonomic Annotation of BLAST Reports This demo illustrates a simple approach to perform taxonomy annotation of BLAST hits. It requires three taxonomy files gi_taxid_prot.dmp, names.dmp and nodes.dmp, which can be downloaded from the NCBI taxonomy FTP site.


Platforms: Matlab

License: Freeware Size: 20.48 KB Download (42): Taxonomic Annotation of BLAST Reports Download

Added: April 22, 2013 | Visits: 357

dbSNP tool dbSNPtool starts a GUI to return polymorphism data from dbSNPwww.ncbi.nih.gov/SNP Calling dbsnptool start the GUI, SNP % records are returned based on keyword. Each result is presented in a % listbox, clicking on the entry loads the sequence into the sequence %viewer. Information is presenting...


Platforms: Matlab

License: Freeware Size: 40.96 KB Download (39): dbSNP tool Download

Added: September 03, 2013 | Visits: 481

WIKINDX for Scripts WIKINDX is a free bibliographic and quotations/notes management and article authoring system designed either for single use (on a variety of operating sytems) or multi-user collaborative use across the internet.Features:User:- 37 resource types.- Multi-user mode - create and manage your own...


Platforms: PHP

License: Freeware Size: 1.38 MB Download (44): WIKINDX for Scripts Download

Added: July 05, 2013 | Visits: 608

Bioinformatic Software Bench The Bioinformatic Software Bench for Drupal allows for a rapid and secure deployment of bioinformatic software. The BLAST, InterProScan, SSAHA2 and annot8r software are provided by default and plugins for new software can be readily written. An innovative graphical user interface guides both...


Platforms: PHP

License: Freeware Size: 92.16 KB Download (44): Bioinformatic Software Bench Download

Added: August 13, 2013 | Visits: 361

DNADynamo DNADynamo sequence analysis software is easy to use. It's user interface is focused on your DNA sequences, proteins and restriction enzyme sites. Sequencing data, oligonucleotide sequences, DNA/Protein annotations and notes can be added to each sequence. Information is accessible whenever it is...


Platforms: Mac

License: Shareware Cost: $0.00 USD Size: 10.92 MB Download (41): DNADynamo Download

Added: July 08, 2013 | Visits: 283

ProtSeqFetch ProtSeqFetch is software for generating artificial metagenomes. The program downloads protein sequences at the genera level directly from the National Center for Biotechnology Information (NCBI) or extracts them from a local copy of the NCBI NR ("non-redundant") database. A non-redundant...


Platforms: Mac

License: Freeware Size: 10.24 KB Download (36): ProtSeqFetch Download

Added: September 05, 2013 | Visits: 287

MALDIPepQuant MALDIPepQuant is a tool to quantify MALDI peptides (SILAC) from Phenyx output. This tool has been developed as a service of the Bioinformatics Core Facility, within a collaboration between the Proteome Informatics Group from the Swiss Institute of Bioinformatics (SIB) and the Biomedical...


Platforms: Mac

License: Shareware Cost: $0.00 USD Size: 40.96 KB Download (38): MALDIPepQuant Download

Added: June 07, 2013 | Visits: 372

Unipro UGENE UGENE is a free cross-platform genome analysis suite. It works perfectly on Windows, Mac OS or Linux and requires only a few clicks to install. Features: * Multiple sequence alignment using MUSCLE 3, KAlign, Clustal; * HMM profiles build and search, based on the source of HMMER 2 and HMMER...


Platforms: Mac

License: Shareware Cost: $0.00 USD Size: 30.7 MB Download (35): Unipro UGENE Download

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