Ncbi Pubmed
CopyCat is a handy application specially designed to offer users an easy and fast access to cophylogenetic analyses. It incorporates a wrapper for the program ParaFit, which conducts a statistical test for the presence of congruence between host and parasite phylogenies.
CopyCat offers various...
Platforms: Linux
License: Freeware | Size: 16 MB | Download (440): CopyCat for Linux Download |
CopyCat is a handy application specially designed to offer users an easy and fast access to cophylogenetic analyses. It incorporates a wrapper for the program ParaFit, which conducts a statistical test for the presence of congruence between host and parasite phylogenies.
CopyCat offers various...
Platforms: Mac
License: Freeware | Size: 16 MB | Download (431): CopyCat for Mac OS X Download |
PerlPrimer is a free, open-source GUI application written in Perl that designs primers for standard PCR, bisulphite PCR, real-time PCR (QPCR) and sequencing. It aims to automate and simplify the process of primer design.PerlPrimer's current features include the following: - Calculation of...
Platforms: *nix, Perl, BSD
License: Freeware | Download (55): PerlPrimer Download |
BlastViewer provides an interactive graphical user interface for the analysis of the reports produced by the BLAST sequence database search system. BlastViewer is an easy to use software designed for everyday biological sequence analysis relying on BLAST. It allows an easy visualisation and...
Platforms: Mac, Java 1.5 or later
License: Freeware | Size: 7.5 MB | Download (61): BlastViewer Download |
For use with BibTeX and (la)TeX, BibDesk is a GUI front-end for managing BibTeX databases in their original .bib form. Search, organize, and cite with drag n' drop. Publish bibliographies to the web as RSS XML.
Platforms: Mac
License: Freeware | Size: 8 MB | Download (46): BibDesk Download |
Evidence Based OMT is a powerful clinical reference and learning tool for any student, clinician or educator involved in the practice or the teaching of manipulative/manual therapy for musculoskeletal disorders. A comprehensive mobile companion providing manipulative techniques for the 9...
Platforms: Mac
License: Commercial | Cost: $99.99 USD | Size: 983 MB | Download (48): Evidence Based OMT Download |
JabRef is an open source bibliography reference manager. The native file format used by JabRef is BibTeX, the standard LaTeX bibliography format. JabRef runs on the Java VM (version 1.5 or newer), and should work equally well on Windows, Linux and Mac OS X. Bibliographies generated by LaTeX and...
Platforms: Windows, Mac, *nix, Java, BSD Solaris
License: Freeware | Download (57): JabRef 2.4b Download |
OnCite is the University College London's online publications database, implemented in MySQL and PHP. For an indication of scale: UCL's database contains (at the time of writing) over 74,000 publications records, 3,700 users, 120 departments, and over a hundred administrators. Features -...
Platforms: Windows, Mac, *nix, PHP, BSD Solaris
License: Freeware | Download (55): OnCite Download |
This program is a parser that abstract a data structure from a given Entrez Gene record, and users of the parser can decide what to do/extract from the data structure. Perl Entrez Gene Parser project provides Perl parsers for NCBI's Entrez Gene based on regular expression, Parse::RecDescent,...
Platforms: Windows, Mac, *nix, Perl, BSD Solaris
License: Freeware | Download (63): Perl Entrez Gene Parser Download |
MGWT: Identification of protein coding regions using the ModifiedGabor-wavelet transform.Sequence of test:F56F11.4.fasta (included into the zip file)http://www.ncbi.nlm.nih.gov/entrez/viewer....de&val=AF099922http://www.vision.ime.usp.br/~jmena/projec...ome_results/F5/References:[1] J. P....
Platforms: Matlab
License: Freeware | Size: 51.2 KB | Download (49): MGWT Download |
NCBI has an implementation of BLAST algorithm on their website at www.ncbi.nlm.nih.gov/BLAST, which is good if you want to query short DNA or protein sequence against various sequence databases. The problem arises when large sequences need to be BLAST'ed against a sequence database or against...
Platforms: Matlab
License: Freeware | Size: 10 KB | Download (40): GUI for Basic Local Alignment Search Tool (BLAST) Download |
EUDMODEL(DVH), where DVH is a 2 column matrix corresponding to the cumulative, not differential, dose volume histogram. The 1st column corresponds to increasing absolute dose or percentage dose values, and the 2nd column to the corresponding absolute or relative volume value. The matrix must have...
Platforms: Matlab
License: Shareware | Cost: $0.00 USD | Size: 10 KB | Download (57): Matlab program for calculating EUD-based NTCP and TCP in external beam radiotherapy Download |
This demo illustrates a simple approach to perform taxonomy annotation of BLAST hits. It requires three taxonomy files gi_taxid_prot.dmp, names.dmp and nodes.dmp, which can be downloaded from the NCBI taxonomy FTP site.
Platforms: Matlab
License: Freeware | Size: 20.48 KB | Download (42): Taxonomic Annotation of BLAST Reports Download |
dbSNPtool starts a GUI to return polymorphism data from dbSNPwww.ncbi.nih.gov/SNP Calling dbsnptool start the GUI, SNP % records are returned based on keyword. Each result is presented in a % listbox, clicking on the entry loads the sequence into the sequence %viewer. Information is presenting...
Platforms: Matlab
License: Freeware | Size: 40.96 KB | Download (39): dbSNP tool Download |
WIKINDX is a free bibliographic and quotations/notes management and article authoring system designed either for single use (on a variety of operating sytems) or multi-user collaborative use across the internet.Features:User:- 37 resource types.- Multi-user mode - create and manage your own...
Platforms: PHP
License: Freeware | Size: 1.38 MB | Download (44): WIKINDX for Scripts Download |
The Bioinformatic Software Bench for Drupal allows for a rapid and secure deployment of bioinformatic software. The BLAST, InterProScan, SSAHA2 and annot8r software are provided by default and plugins for new software can be readily written. An innovative graphical user interface guides both...
Platforms: PHP
License: Freeware | Size: 92.16 KB | Download (44): Bioinformatic Software Bench Download |
DNADynamo sequence analysis software is easy to use. It's user interface is focused on your DNA sequences, proteins and restriction enzyme sites. Sequencing data, oligonucleotide sequences, DNA/Protein annotations and notes can be added to each sequence. Information is accessible whenever it is...
Platforms: Mac
License: Shareware | Cost: $0.00 USD | Size: 10.92 MB | Download (41): DNADynamo Download |
ProtSeqFetch is software for generating artificial metagenomes. The program downloads protein sequences at the genera level directly from the National Center for Biotechnology Information (NCBI) or extracts them from a local copy of the NCBI NR ("non-redundant") database. A non-redundant...
Platforms: Mac
License: Freeware | Size: 10.24 KB | Download (36): ProtSeqFetch Download |
MALDIPepQuant is a tool to quantify MALDI peptides (SILAC) from Phenyx output. This tool has been developed as a service of the Bioinformatics Core Facility, within a collaboration between the Proteome Informatics Group from the Swiss Institute of Bioinformatics (SIB) and the Biomedical...
Platforms: Mac
License: Shareware | Cost: $0.00 USD | Size: 40.96 KB | Download (38): MALDIPepQuant Download |
UGENE is a free cross-platform genome analysis suite. It works perfectly on Windows, Mac OS or Linux and requires only a few clicks to install. Features: * Multiple sequence alignment using MUSCLE 3, KAlign, Clustal; * HMM profiles build and search, based on the source of HMMER 2 and HMMER...
Platforms: Mac
License: Shareware | Cost: $0.00 USD | Size: 30.7 MB | Download (35): Unipro UGENE Download |