Ncbi Pubmed

WSciParser or Web Science Parser is a handy, small library developed in C#.NET specially designed to parse data from web science databases (ISI Web, NCBI, PubMed...) for WindowsAll

Peptide::Pubmed is a Perl module that can extract peptide sequences from MEDLINE article abstracts. SYNOPSIS use Peptide::Pubmed; $parser = Peptide::Pubmed->new; $in = { PMID => q[15527327], Author => q[Doe JJ, Smith Q], Journal => q[J Biological Foo. 2004;8(2):123-30.], Title => q[Foo,...

Lists the direct PDF link next to each search result in PubMed, using API of http://thepaperlink.appspot.com It enhances the existing results display by showing: * Impact Factor of the Journal * Direct link to its PDF file * External page of the article * Faculty 1000 score and comment page link


Platforms: *nix

As part of implementation of CMS for Biomedical applications, it is often a requirement to display publications from well known databases. One such database is called PubMed which is provided National Center for Biotechnology Information, National Library of Medicine and National Institutes of...


Platforms: PHP

RefSense is the name of both a web interface to PubMed, and a set of command line tools for accessing PubMed. RefSense was previously distributed as Biblio. The web interface provides easy access to PubMeds data as well as some useful tools not found at the actual PubMed site. The command...


Platforms: *nix

WinBlast is a handy, easy to use application specially designed to offer you a graphical front-end for NCBI BLAST.


Platforms: Windows

This software is to help the those connected with Biology,Biotechnology,Bio Informatics.The user can select from the choices of proteins, nucleotides,etc(All those found on NCBI's website)and search for the specific results


Platforms: Windows, Mac, BSD, Linux

Estimate LDL cholesterol based on measured total cholesterol (TC), HDL, and triglycerides (TG).The function 'estimateLDL(TC, HDL, TG, InputUnits)' provides an estimate for the LDL cholesterol on measured total cholesterol (TC), HDL cholesterol, and triglycerides (TG).For most cases, the classical...


Platforms: Matlab

This module allows to import PubMed articles by ID and by Search term into the biblio database. Moderated mass retrieval per Batch API and cronjob as well as automatic updates in cron makes it a valuable addition to the biblio module.Built mostly by agaric on behalf of the Science Collaboration...


Platforms: PHP

Papers is an application that manages many PDF files of articles, whose information can be obtained by PubMed. If you have articles as PDF files whose filenames are PMID.pdf (e.g. 10867176.pdf), you can import the articles into iPapers by drag and drop operation. PMID is the unique ID provided by...


Platforms: Mac

Blast Viewer gives you a graphic interface to view reports produced by search systems in NCBI and EBI BLAST databases.Blast Viewer is a simple to use software designed for the daily analysis of biological sequences. It lets you view and analyze the enormous quantities of data that come from a...


Platforms: Windows

RefNavigator is a professional bibliography tool for researchers, scholars and students. It is designed to search scientific references from Internet and generate bibliographies. It can manage your references and notes, group references automatically by year, author, keywords or tags....


Platforms: Windows

PubMedMaker is a bibliographic application for those in the fields of medicine and biology. It will convert PubMed data to FileMaker Pro files simply by dragging and dropping. PubMed is a free on-line web site for MEDLINE offered by National Library of Medicine. PubMedMaker also makes Reference...


Platforms: Mac

PubMedMaker is bibliography software, similar in principle to EndNote, Pro-Cite and Reference Manager. This shareware program is designed for anyone who wishes to manage medical literature data with FileMaker Pro database. We aim at easy to use and intuitional operation for managing MEDLINE data....


Platforms: Mac

The Entrez Widget provides a quick access to the NCBI Databases. You just have to enter your search terms and the result will be displayed in a new browser window.


Platforms: Mac

Geneious Basic is your personalized library of genomic and genetic data; that provides a fully integrated, visually advanced toolset for:Sequence alignment and phylogeneticsSequence analysisBLAST, Protein structure viewing, NCBI, EMBL, Pubmed auto-find & moreAPI for creating your own plugins...


Platforms: Mac

The BLAST widget provides a quick access to the Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.


Platforms: Mac

Translated BLAST Widget provides a quick access to the Translated Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.


Platforms: Mac

Protein BLAST Widget provides a quick access to the Protein Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.


Platforms: Mac

Nucleotide BLAST Widget provides a quick access to the Nucleotide Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.


Platforms: Mac