Molecules

Molecules and Light is a Java application designed to enable you to observe the interaction of light and molecules. Do you ever wonder how a greenhouse gas affects the climate, or why the ozone layer is important? Now you can find out, with the aid of this application. for WindowsAll

Suite of freeware tools for automating work of rendering and animating molecules

In the web marketing/publishing industry a content molecule is basically a piece of reusable content that can be placed throughout a website. Typically isolated in nature, they often appear in sidebars and margins. Applying this concept to the WordPress framework, you can create content that can...


Platforms: PHP

Starting from atoms, see how many molecules you can build. Collect your molecules and see them in 3D!


Platforms: Mac

Explore molecule shapes by building molecules in 3D! Find out how a molecule's shape changes as you add atoms to a molecule.


Platforms: Mac

Pump gas molecules to a box and see what happens as you change the volume, add or remove heat, change gravity, and more. Measure the temperature and pressure, and discover how the properties of the gas vary in relation to each other.


Platforms: Mac

This screensaver shows real 3D models of biological molecules rotating. Your screen will look like screens of computers in science fiction films! Six molecules are available in the current version: four prototypes of DNA (Deoxyribonucleis Acid - storage of genetics information) and two proteins -...


Platforms: Windows

This program creates custom Desktop Wallpaper for your PC every time Windows starting. Real 3D models of biological molecules are shown on wallpaper image. You may choose one molecule from six available, rotation axis and image scale ratio.Six molecules are available in the current version: four...


Platforms: Windows

Unique interactive multimedia Chemistry teaching software that tests students as they learn. Topics covered include: elements, atoms and molecules, word equations, chemical symbols, Periodic Table and chemical formulas. Plus interactive simulations to teach the balancing of chemical equations and...


Platforms: Windows

In this game there will be a grid of atoms of carbon, hydrogen and oxygen. You need to form molecules by arranging the atoms in a particular sequence. For example, one hydrogen, one oxygen and then one hydrogen will form one water molecule. There are 4 types of molecules that you can form: water,...


Platforms: Windows

States of Matter: Basics is a simple and easy-to-use Java simulation that has been designed to allow you to watch different types of molecules form a solid, liquid, or gas. Change the temperature or volume of a container and see a pressure-temperature diagram respond in real time. Relate the...


Platforms: Windows, Windows Vista, 7

GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. It is primarily designed for biochemical molecules like proteins, lipids and nucleic acids that have a lot of complicated bonded...


Platforms: Mac, Linux

The Chemical Structures Project is a set of 3D structures of molecules in CML format. Each file contains also some physical properties, which can be access using a web browser or a CML file reader.


Platforms: Windows, Mac, Linux

EasyChem is designed to draw chemical molecules in an intuitive way, with a very high quality (designed for book-publishing). Exporting is done to various formats (PostScript, Fig, LaTeX, etc.) to help you integrate your drawing in any software you use.


Platforms: Windows, Mac, BSD, Linux

GDIS is a scientific visualization program for the display, manipulation, and analysis of isolated molecules and periodic structures. It is in development, but is nonetheless quite functional. It has the following features: * Support for many common file formats (CIF, PDB, XTL, XYZ, and many...


Platforms: *nix, C/C++, BSD

An editor for small organic molecules, written in C using gtk+. It can read and write SMILES and cml and can save to dia's file format. It is suitable for creating chemical molecule diagrams for lower level chemistry/ochem lab reports.


Platforms: Windows, Mac, Linux

MacMolPlt is a Chemistry visualization tool that can be used to build molecules with an integrated graphical model builder, create input files for the GAMESS computational chemistry program, and then visualize the results of computational chemistry runs. Features include a high-quality 3D...


Platforms: Mac

In this submission we present the code of the Replacement Method (RM) [1-4] and Enhanced Replacement Method (ERM)[5], that were proposed some time ago by our group. Both methods produce linear regression QSPR-QSAR models that are quite close the FS (full search) ones with much less computational...


Platforms: Matlab

The file drawpdb.m is about 40 lines of code that makes a simple compact viewer of small molecules. A number of .pdb files are also included.


Platforms: Matlab

This method computes an accurate continuous approximation of the DW-MRI signal using adaptive kernels (A. Barmpoutis et al. "Adaptive kernels for multi-fiber reconstruction", In the Proceedings of IPMI, 2009). The approximation is based on Fig. 3 of the article which shows the plot of the DW-MRI...


Platforms: Matlab