Molecular Probes

Given the chemical formula, MolWgt calculates the molecular weight of a substance.

NOC is a open source development toolkit and a powerful molecular explorer for protein structure visualizing,analysis,crystallographic mapping, modeling, and refinement, Gromacs/Amber MD trajectories displaying,movie making...

A database to handle voucher specimens of DNA sequences used for molecular phylogenetics.


Platforms: Windows, Mac, Linux

Octet is an object-oriented molecular representation framework written in Java.


Platforms: Windows, Mac, Linux

'Plasmidb' is a database management system (RDMS) used to manipulate, view and store molecular biology information rapidly and easily. Editable information includes: constructed plasmids, clones, standard vectors, primers, antibiotics, enzymes and more


Platforms: Windows, Mac, Linux

ProbeMaker is a framework for design of sets of oligonucleotide probes. It allows the design of different types of probes made up of separate sequence elements. A Plug-in mechanism allows extension of the framework with new functionalities.


Platforms: Windows, Mac, Linux

PSI is an open-source program for computing molecular properties using high-accuracy, ab initio, quantum mechanical models.


Platforms: Mac, BSD, Linux

A 3D viewer for molecular charge distributions.Implemented in OpenGL with GLUT.Includes a small OpenGL windowing library/widget set.


Platforms: Windows, Mac, BSD, Linux

A utility for animating molecular vibrations. Normal modes are read from a file automatically determined to be from Aces2, Gamess, PC Gamess, Gaussian 90/92/95/94/98, ADF, Dalton, Jaguar, MOPAC, or Spartan.


Platforms: Windows, Mac, Linux

Explore the genetic building blocks of Ableton’s Live software in this deep, 22-video, molecular explanation of Live’s essential performance ingredients... Just as real DNA is made up of genes, Live’s genetic materials are the collection of advanced


Platforms: Mac

The Python Macromolecular Library (mmLib) is a software toolkit and library of routines for the analysis and manipulation of macromolecular structural models, implemented in the Python programming language. It is accessed via a layered, object-oriented application programming interface, and...


Platforms: Windows, Mac, *nix, Python, BSD Solaris

Matlab procedure that generates a Surface Plasmon Resonance profile to compare it with experimental data. Relevant parameters are given as graphical input.A 90dlT- prism is assumed, the reflected intensity is plotted against the external angle. It can be plotted on its own, or compared to a file...


Platforms: Matlab

HOT is a package originally constructed for combustion modeling in Matlab. It calculates common thermodynamic properties such as enthalpy, specific heat, entropy, internal energy, gamma, ideal gas constant, molecular weight, etc


Platforms: Matlab

MolMass is a function for calculating the molar weight of a substance given in form of a chemical formula.Function call: MM = MolMass(substance)Substance is a string of the chemical formula of a substance.Example: MM = MolMass('Fe2(SO4)3');Substance can also be a vector of substances opened by...


Platforms: Matlab

The Mole Package contains 3 mfiles and 1 matfile. molecules2 calculates molecular masses pertable provides data on the elements sym2an converts a chemical symbol to a valid atomic number (useful for molecules2 and pertable). atoms contains atomic number data.


Platforms: Matlab

This function allows calculating the compressibility factor, the coefficient of fugacity and density of a pure compound using the modified Iwai-Margerum-Lu Cubic Equation of State (IML-CEoS).The next data are necessary: temperature, pressure, molecular weight, acentric factor, and experimental...


Platforms: Matlab

This function allows calculating the compressibility factor, the coefficient of fugacity and density of a pure compound using the Soave-Benedict-Webb-Rubin equation of state (SBWR-EOS).The next data are necessary: temperature, pressure, molecular weight, acentric factor, and critical properties...


Platforms: Matlab

Molecular Workbench simulation of a polypeptide crystal. Use the slider in the top right to increase the temperature of the system until the polypeptides lose their original form. Cool the system. Why don't the polypeptides regenerate their original forms?


Platforms: Mac

SeaView is a multiplatform, graphical user interface for multiple sequence alignment and molecular phylogeny. SeaView reads and writes various file formats of DNA and protein sequences and of phylogenetic trees. SeaView drives programs muscle or clustalw for multiple sequence alignment, and...


Platforms: Mac

NCL is a C++ library for interpreting data files created according to the NEXUS file format used in molecular evolution and phylogenetic systematics.


Platforms: Mac