Molecular Modelling
Open3DGRID is an application designed for high-throughput generation of molecular interaction fields or MIFs. Open3DGRID can generate steric potential, electron density and MM / QM electrostatic potential fields; furthermore, it can import GRIDKONT binary files produced by GRID and CoMFA / CoMSIA...
Platforms: Windows
License: Freeware | Download (465): Open3DGRID x64 Download |
Open3DGRID is an application designed for high-throughput generation of molecular interaction fields or MIFs. Open3DGRID can generate steric potential, electron density and MM / QM electrostatic potential fields; furthermore, it can import GRIDKONT binary files produced by GRID and CoMFA / CoMSIA...
Platforms: Linux
License: Freeware | Download (434): Open3DGRID for Linux Download |
Open3DGRID is an application designed for high-throughput generation of molecular interaction fields or MIFs. Open3DGRID can generate steric potential, electron density and MM / QM electrostatic potential fields; furthermore, it can import GRIDKONT binary files produced by GRID and CoMFA / CoMSIA...
Platforms: Mac
License: Freeware | Download (418): Open3DGRID for Mac OS X Download |
Open3DGRID is an application designed for high-throughput generation of molecular interaction fields or MIFs. Open3DGRID can generate steric potential, electron density and MM / QM electrostatic potential fields; furthermore, it can import GRIDKONT binary files produced by GRID and CoMFA / CoMSIA...
Platforms: Windows
License: Freeware | Download (421): Open3DGRID Download |
Open3DALIGN is an open-source software aimed at unsupervised molecular alignment. Open3DALIGN is a command-line tool which is operated by means of a few commands which can be entered interactively from a command prompt, read from a batch script or piped through standard input. If PyMOL is...
Platforms: Mac
License: Freeware | Size: 3.6 MB | Download (434): Open3DALIGN for Mac OS X Download |
Open3DALIGN is an open-source software aimed at unsupervised molecular alignment. Open3DALIGN is a command-line tool which is operated by means of a few commands which can be entered interactively from a command prompt, read from a batch script or piped through standard input. If PyMOL is...
Platforms: Windows
License: Freeware | Size: 4.1 MB | Download (424): Open3DALIGN Download |
Open3DALIGN is an open-source software aimed at unsupervised molecular alignment. Open3DALIGN is a command-line tool which is operated by means of a few commands which can be entered interactively from a command prompt, read from a batch script or piped through standard input. If PyMOL is...
Platforms: Linux
License: Freeware | Size: 3.3 MB | Download (430): Open3DALIGN for Linux Download |
PaDEL-Descriptor is a handy utility designed to perform molecular calculation. It calculates 797 descriptors (663 1D, 2D descriptors and 134 3D descriptors) and 10 types of fingerprints.
Platforms: Windows
License: Freeware | Download (504): PaDEL-Descriptor Download |
Art of Illusion is a free, open source 3D modelling and rendering studio. Many of its capabilities rival those found in commercial programs. Highlights include subdivision surface based modelling tools, skeleton based animation, and a graphical language for designing procedural textures and...
Platforms: Windows
License: Freeware | Size: 8.31 MB | Download (463): Art of Illusion for Windows Download |
Art of Illusion is a free, open source 3D modelling and rendering studio. Many of its capabilities rival those found in commercial programs. Highlights include subdivision surface based modelling tools, skeleton based animation, and a graphical language for designing procedural textures and...
Platforms: Mac
License: Freeware | Size: 6.77 MB | Download (397): Art of Illusion for Mac OS X Download |
Art of Illusion is a free, open source 3D modelling and rendering studio. Many of its capabilities rival those found in commercial programs. Highlights include subdivision surface based modelling tools, skeleton based animation, and a graphical language for designing procedural textures and...
Platforms: Linux
License: Freeware | Size: 9.65 MB | Download (412): Art of Illusion for Linux Download |
Discover what database professionals have known for years -- that enterprise databases are designed with enterprise modelling tools. Why has this been a secret for so many? Why do so many labor with buckets full of error-prone undocumented SQL? Well, it seems no one has been able to pack the...
Platforms: Windows, Mac, Linux
License: Demo | Cost: $0.00 USD | Size: 10.4 MB | Download (55): Data Architect Download |
trendingBot is a powerful numerical simulation tool bringing some fresh air into the computational modelling community. Its innovative algorithm (fully developed by our engineers) performs as-detailed-as-necessary calculations, reduces the number of simplifications and avoids the use of arbitrary...
Platforms: Windows
License: Shareware | Cost: $1300.00 USD | Size: 15.35 MB | Download (44): trendingBot Download |
AppComplete is a modelling and prototyping tool from CapableObjects.com , contains a UML-class modeller, contains a UML-state machine modeller, lets you execute your model including the state machines, uses the standard OCL as constraint and query language, can reverse engineer existing...
Platforms: Windows
License: Shareware | Cost: $700.00 USD | Size: 5.5 MB | Download (50): AppComplete Download |
GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.
It is primarily designed for biochemical molecules like proteins, lipids and nucleic acids that have a lot of complicated bonded...
Platforms: Mac, Linux
License: Freeware | Size: 9.92 MB | Download (675): Gromacs for Mac OS X and Linux Download |
Event-B is a formal method for system-level modelling and analysis. Key features of Event-B are the use of set theory as a modelling notation, the use of refinement to represent systems at different abstraction levels and the use of mathematical proof to verify consistency between refinement...
Platforms: Windows, Mac, *nix, Java, BSD Solaris
License: Freeware | Download (50): RODIN Download |
Umbrello UML Modeller is a Unified Modelling Language diagram programme for KDE. UML allows you to create diagrams of software and other systems in a standard format. Our handbook gives a good introduction to Umbrello and UML modelling.
Platforms: *nix
License: Freeware | Size: 2.35 MB | Download (44): Umbrello UML Modeller Download |
This m-file gives the atomic weight of any element or molecular weight of any chemical species.Input:species = (cell array)The species is the 'formula'.Output:Atomic weight of any element or molecular weight of any chemicalspecies.
Platforms: Matlab
License: Freeware | Size: 10 KB | Download (46): amolwt Download |
This is set of functions that allow opening of Molecular Imaging atomic force microscope files into Matlab matrix. Unzip the files in one directory and type in Matlab command prompt:y=ReadSTP('pathfilename.stp',buffer number).Matrix y will contain z values of measured surface. Comments will show...
Platforms: Matlab
License: Freeware | Size: 10 KB | Download (43): ReadSTP Download |
WoPeD (Workflow Petri Net Designer) is an open-source software developed at the Cooperative State University Karlsruhe under the GNU Lesser General Public License (LGPL). The main goal of this tool is to provide an easy-to-use software tool for modelling, simulating and analyzing workflow process...
Platforms: Mac
License: Freeware | Size: 18.69 MB | Download (37): WoPeD Download |