Molecular Modelling

MeshX is a basic 3D modelling program, for creating, viewing, editing, and sav

CHEMIX School is an educational tool for learning chemistry. It is geared toward college-level chemistry, but is also appropriate for high-school students, chemists, and teachers. It is equipped with a periodic table containing history, 19 physical properties + number of stable isotopes,...

Art of Illusion is a free, open source 3D modelling and rendering studio. Many of its capabilities rival those found in commercial programs. Highlights include subdivision surface based modelling tools, skeleton based animation, and a graphical language for designing procedural textures and...


Platforms: Windows, Mac, *nix, Java, BSD Solaris

Time Series API is a professional C++ class library for simulating (backtesting) and deploying financial trading strategies as well as general purpose time series modelling. The library is a stand-alone time series engine that can be extended via a component object model. Models are defined...


Platforms: Windows

Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. This project offers a flexible rendering engine and a powerful plugin architecture. The main concept behind Avogadro...


Platforms: *nix

Games::Othello is a Perl extension for modelling a game of Othello. SYNOPSIS use Games::Othello; my $game = Games::Othello->new(); while( !game->over ) { printf "It is presently %ss move", ($game->whos_move eq b) ? black, white; my @possible_moves = values $game->possible_moves(); if...


Platforms: *nix

Alzabo is a Perl module with data modelling tool and RDBMS-OO mapper. SYNOPSIS Cannot be summarized here. What is Alzabo? Alzabo is a suite of modules with two core functions. Its first use is as a data modelling tool. Through either a schema creation GUI, a perl program, or reverse...


Platforms: *nix

ASCEND is a flexible modelling environment for solving hard engineering and science problems. It offers: - an object-oriented model description language for describing your system, - an interactive user interface that allows you to solve your model and explore the effect of changing the model...


Platforms: *nix

openModeller library is a spatial distribution modelling library, providing a uniform method for modelling distribution patterns using a variety of modelling algorithms. openModeller can be used via programatic interfaces, including SOAP and SWIG-python, as well as via a user friendly desktop...


Platforms: *nix

Ayam is a free 3D modelling environment for the RenderMan interface, distributed under the BSD licence. This means that neither the author nor any contributors make money out of this software. We need your (yes your!) feedback to keep this project alive. If you use Ayam, please submit your...


Platforms: *nix

Bio::MCPrimers is a Perl module to create molecular cloning PCR primer pairs for a given gene so that the gene can be directionally inserted into a vector. Solver is generic, restriction enzymes and their order in the vector are specified in the caller. XPORT SUBROUTINES sub find_mc_primers...


Platforms: *nix

LAMMPS project is a Molecular Dynamics Simulator. LAMMPS has potentials for soft materials (biomolecules, polymers) and solid-state materials (metals, semiconductors) and coarse-grain systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the mesoscale...


Platforms: *nix

Innesoft DeepMesh is a professional and reliable application designed for 3D modelling. It features support for over 20 model formats, skinned animation, a built-in uv mapper, lightmapper and hundreds of tools for building and editing character models, maps and environments. Ideal for game...


Platforms: Windows

Open3DALIGN is an open-source software aimed at unsupervised molecular alignment. Open3DALIGN is a command-line tool which is operated by means of a few commands which can be entered interactively from a command prompt, read from a batch script or piped through standard input. If PyMOL is...


Platforms: Windows

BALLView is our standalone molecular modeling and visualization application. Furthermore it is also a framework for developing molecular visualization functionality. It is available free of charge under the GPL for Linux, Windows and MacOS. It provides fast OpenGL-based visualization of...


Platforms: Windows

PyMOL is a user-sponsored molecular visualization system on an open-source foundation. Please support development of this open, effective, and affordable software by purchasing an incentive copy, which is pre-built and comes with maintenance and support. PyMOL can interpret over 30 different...


Platforms: Windows, Mac, Linux

The Ascalaph Designer application was developed for molecular models and simulations. Using this application you can simulate, molecular graphics, optimization, molecular dynamics, quantum chemistry. Features: Molecular graphics Multiple windows Two cameras per model CPK, Wire frame,...


Platforms: Windows

Geneious is a useful, unique and easy-to-use software system which has been designed to greatly speed up and simplify the research in molecular biology and biochemistry. Geneious is a cross-platform research engine for the retrieval, organization and analysis of biomolecular data that allows...


Platforms: Windows

MOPlot is a handy visualization application specially designed for fast molecular orbitals plotting from the outputs of the Gaussian 03/98/94, Molcas, Gamess/US quantum chemical calculation packages. This Molecular Orbital Plotting Program will prove to be easy-to-use and very efficient. MOPlot...


Platforms: Windows, XP

Geneious is a useful, unique and easy-to-use software system which has been designed to greatly speed up and simplify the research in molecular biology and biochemistry. Geneious is a cross-platform research engine for the retrieval, organization and analysis of biomolecular data that allows...


Platforms: Windows