Loci Toolsjar

Imports formats from Zeiss, Leica, Nikon, Olympus, MetaMorph and others via BioFormatsAmongst others, following formats are supported:lsm, zvi, ics, nd2, pic, dv, img, tif,imreadBF loads multiple user-defined image slices at once.[imageStack]=imreadBF(datname,zplanes,tframes,channel)You can load...

Software from LoCI Laboratory is devoted to information logistics, the study of the flexible coscheduling of the physical resources that underpin computer systems: storage, computation, and data transmission. We use IBP, L-Bone, exNode and LoRS.

This program, BayeScan aims at identifying candidate loci under natural selection from genetic data, using differences in allele frequencies between populations. BayeScan is based on the multinomial-Dirichlet model. One of the simplest possible scenarios covered consists of an island model in...


Platforms: Windows, Mac, Linux

The FastPCR software was developed to be an integrated tools environment that provides comprehensive facilities for designing primers for most PCR applications including standard, long distance, inverse, real-time, multiplex, unique and group-specific; overlap extension PCR (OE-PCR)...


Platforms: Windows, XP, 2003, Windows Vista, XPX64, 7, 7x64

Easyfig enables the creation of linear comparison figures showing BLAST matches between multiple genomic loci or prokaryote genomes. Easyfig has an easy-to-use graphical user interface and is able to launch BLAST searches interactively. Features: BLAST comparisons between multiple genomic regions...


Platforms: Windows

The basic allelic case-only test for interaction between a pair of genetic loci. This implementation uses a permutation test to calculate marker-pair-wise p-values, gene-pair-wise p-values, and global family-wise p-values. See the read.me, or upcomin


Platforms: Windows, Mac, Linux

Interactive geometry software for performing interactive calculations, visualization and modeling in math, science and engineering. The construction concept and the interactive visualization are the basis of the program. Designed to be easy-to-use, it provides a powerful mathematical platform...


Platforms: Windows, Windows 7, Windows Server

UNPHASED is a small, simple, Java based application specially designed to offer users a versatile tool for performing genetic association analysis. This utility implements maximum-likelihood inference on haplotype and genotype effects while allowing for uncertain phase and missing genotypes....


Platforms: Windows

The C++ library for bioinformatics and artificial intelligence. Basic abstractions (like attribute, domain, state, etc.), DNA primitives (Nucleotide, Chain, EnergyNucleo, SecStruct, FoldedChain, FoldedPair, Codon, CodonAminoTable, Nussinov algorithm), population genetics primitives (Allele,...


Platforms: Mac

Archimedes Geo3D allows the user to execute geometric constructions in three dimensions. It generalizes the well-known ruler and compass constructions to spatial geometry. The most important elements are * Points * Lines * Circles * Planes * Spheres * Vectors * Loci Archimedes allows...


Platforms: Mac

GenoDive is a Mac-only program for population genetics analyses. The present version is a beta, which means that it will still contain bugs, and some analyses are not yet fully implemented. Please report any issues, bugs or praise that you may have to the author. This version should work on Mac...


Platforms: Mac