Kegg

Genom 2005 is a feature rich and user friendly application for analysing array-experiments (e.g. from provider Affymetrix). It includes normalisation of raw data, additional gene information official gene names, location, function prediction, sequences, database references (GeneOntology,...

A tool to construct the metabolic networks from KEGG, and compare the constructed metabolic networks. Phylogenetic trees can be constructed along the case.

SBMLforge is a tool that enables the user to convert and merge KEGG metabolic and signaling pathways (KGML format) to create a single SBML pathway model.


Platforms: Windows, Mac, Linux

Each TS was tested for functional enrichment using annotation obtained from numerous ontologies or curated databases (Gene Ontology, KEGG, BioCarta, Swiss-Prot, BBID, SMART, NIH Genetic Association DB, COG/KOG, TargetScan, PicTar, TFBSConserved,...).


Platforms: Mac

MEFIT, also known as the Microarray Experiment Functional Integration Technology is developed as a system for microarray integration. Given any amount of microarray data, it predicts the probability of pairwise functional relationship for any gene pair within individual biological functions....


Platforms: Windows

CytoSEED was built as a Cytoscape plugin that can help you view, manipulate and analyze metabolic models created using the Model SEED. The CytoSEED plugin was designed in order to enable users of the Model SEED to create informative visualizations of the reaction networks generated for their...


Platforms: Windows, Windows Vista, 7

A Tool for Retrieval, Visualization and Analysis of biological Pathways. Import a Gene or Protein Set from any Excel file. Automatically find signaling Pathways from KEGG. Integrate your Data in Seconds with a live interactive Force-directed Layout.


Platforms: Windows, Mac

This tool is a platform-independent software to create individual pathways and to examine biological networks of distributed, heterogeneous data sources, e.g. KEGG, BRENDA.


Platforms: Windows, Mac, Linux

Blast2GO?*A* is an ALL in ONE tool for functional annotation of (novel) sequences and the analysis of annotation data. Main Application Features are: Easy start up and low maintenance. Make sure you have JAVA, download Blast2GO from this site and start using the application. Updates are...


Platforms: Mac

* Ali Baba helps you to search and visualize protein- and disease-centered information from PubMed. * Ali Baba displays the search result in form of a graph -- biological/medical objects such as proteins, diseases, or drugs are nodes; meaningful associations between them are edges. * Find out...


Platforms: Mac

MetaQuant is a Java based program for the automatic and accurate quantification of GC/MS based metabolome data. In contrast to other programs MetaQuant is able to quantify hundreds of substances simultaneously without manual intervention. The integration of a self-acting calibration function...


Platforms: Mac

A Tool that manages Pathway Retrieval, Visualization and Analysis. Import a Gene or Protein Set from any Excel file. Find matching Pathways from KEGG. Integrate, visualze and analyze your Data in Seconds with interactive Force-directed Layout .


Platforms: Mac