Integer Sequence

Bio::AlignIO::msf is a Perl module with msf sequence input/output stream. SYNOPSIS Do not use this module directly. Use it via the Bio::AlignIO class. This object can transform Bio::Align::AlignI objects to and from msf flat file databases. The rest of the documentation details each of...

Number::Latin is a Perl module that can convert to/from the number system "a,b,...z,aa,ab..." SYNOPSIS use Number::Latin; print join( , map int2latin($_), 1 .. 30), "n"; # # Prints: # a b c d e f g h i j k l m n o p q r s t u v w x y z aa ab ac ad Some applications, notably the...

XNum project is a integer arithmetic library written in C++. The difference between XNum and other libraries such as GMP is the the former tries to imitate the practical method that humans use to do the arithmetic themselves. xnum implements the four basic operations (+, -, *, /) using the...


Platforms: *nix

SigBrowser is a small tool to display large signals (up to 2 GB filesize / 1-6 channels / 16 bit integer). SigBrowser allows you to smoothly browse in a large signal. It can load 16 bit signed integer data with up to 6 interlaced channels. Unfortunately theres no large-file support, so the...


Platforms: *nix

Algorithm::NeedlemanWunsch is a sequence alignment with configurable scoring. SYNOPSIS use Algorithm::NeedlemanWunsch; sub score_sub { if (!@_) { return -2; # gap penalty } return ($_[0] eq $_[1]) ? 1 : -1; } my $matcher = Algorithm::NeedlemanWunsch->new(&score_sub); my $score =...


Platforms: *nix

Gene Inspector is a unique combination of a versatile electronic laboratory research notebook and a comprehensive sequence analysis product. Using GI, the user has the ability to define an entire 'suite of analyses' that can be performed each time they (or anyone in the lab) has a new sequence,...


Platforms: Mac

MacVector... Researchers who want a simple but comprehensive desktop sequence analysis application continually turn to MacVector, the leading sequence analysis package for the Macintosh. MacVector provides sequence editing, primer design, Internet database searches, protein analysis, sequence...


Platforms: Mac

Sequencher is the industry standard software for DNA sequence analysis. It works with all automated sequencers and is widely known for its lightning-fast contig assembly, short learning curve, user-friendly editing tools, and superb technical support. First released almost 15 years ago,...


Platforms: Mac

SQLUtilities extends the T-SQL scripting environment by adding 64 new general-purpose functions for text, date/time and numeric processing that can be used directly within queries and stored procedures at the database layer. Date and time functions include table-valued sequence generator...


Platforms: Windows

SeqEntropy was designed as an accessible, easy-to-use and handy assessment instrument of sequence repeats for short read sequencing. Now you can access and make use of this useful tool directly from the Command Line Interface found in your system.


Platforms: Windows

ProtAnnot is a small, Java based application is a protein annotation viewer that displays protein annotations in the context of the genomic sequence. This software is a making it easy to see how alternative mRNA structures affect the various protein products encoded at a locus. for WindowsAll


Platforms: Windows

The FastPCR software was developed to be an integrated tools environment that provides comprehensive facilities for designing primers for most PCR applications including standard, long distance, inverse, real-time, multiplex, unique and group-specific; overlap extension PCR (OE-PCR)...


Platforms: Windows, XP, 2003, Windows Vista, XPX64, 7, 7x64

YAFU or Yet Another Factoring Utility is an interactive Command Line instrument for integer factorization. YAFU has a general purpose function, factor, which tries to optimally reduce a number to its factors using a combination of all of the implemented methods. This method measures the elapsed...


Platforms: Windows

Oligomer is a small, simple, Java based application specially designed to help you perform sequence analysis with standard and mixed bases. This tool will also help you find out the physical properties of the sequence, so that you get a complete bio-informatics software. for WindowsAll


Platforms: Windows

UGENE is a comprehensive genome analysis suite that features multiple sequence alignment and a complex HMM builder and search module. for WindowsAll


Platforms: Windows

ClaMS is a handy application specially designed to offer you a sequence composition-based classifier for metagenomic sequences. ClaMS works by capturing signatures of each sequence based on the sequence composition. Each sequence is modeled as a walk in a de Bruijn graph with underlying Markov...


Platforms: Windows

Artemis is a free genome browser and annotation tool that allows visualisation of sequence features, next generation data and the results of analyses within the context of the sequence, and also its six-frame translation. Artemis is written in Java, and is available for UNIX, Macintosh and...


Platforms: Windows, Mac, Linux, Java

Jnomics is a collection of cloud-scale DNA sequence analysis tools


Platforms: Mac

QTHextool is a small, simple, easy to use application specially designed to offer you an integer calculator tool. This software uses a simple Stack RPN like user-style. So, if you were looking for an integer calculator, then take QTHextool for a spin and check out its capabilities.


Platforms: Windows

ABySS-Explorer is an interactive Java application that employs a novel graph-based representation to display a sequence assembly and associated meta data. The tool was designed with the ABySS sequence assembler in mind and was motivated by the need to examine assembly structure, in particular...


Platforms: Windows