Hierarchical Clustering

Measure percentage of Accuracy and the Rand index of clustering resultsThe number of class must equal to the number clusterOutput Acc = Accuracy of clustering results rand_index = Rand's Index, measure an agreement of the clustering results match = 2xk matrix which are the best match of the...

A new soft clustering algorithm is presented (Clustering through Optimal Bayesian Classification). The algorithm does not depend on random initializations, and it contains a native metric to select the optimal number of clusters.The clustering algorithm minimizes the log-Bayesian risk...

SpectralClustering performs one of three spectral clustering algorithms (Unnormalized, Shi & Malik, Jordan & Weiss) on a given adjacency matrix. SimGraph creates such a matrix out of a given set of data and a given distance function.The code has been optimized to be both fast and memory...


Platforms: Matlab

The code for the spectral graph clustering concepts presented in the following papers is implemented for tutorial purpose:1. Ng, A., Jordan, M., and Weiss, Y. (2002). On spectral clustering: analysis and an algorithm. In T. Dietterich, S. Becker, and Z. Ghahramani (Eds.), Advances in Neural...


Platforms: Matlab

QT clustering algorithm as described in:Heyer, L. J., Kruglyak, S., Yooseph, S. (1999). Exploring expression data: Identification and analysis of coexpressed genes. Genome Research 9,...


Platforms: Matlab

Hierarchical Documentation allows admins to create public pages of documentation and organize them hierarchically using a tree listing the pages where each page can be dragged to its desired position. It supports syntax highlighting for blocks of code and Markdown.For an example of Hierarchical...


Platforms: PHP

hierarchical notebook(hnb) is a curses program to structure many kinds of data in one place, for example addresses, to-do lists, ideas, book reviews or to store snippets of brainstorming. Writing structured documents and speech outlines. The default format is XML but hnb can also export to ASCII...


Platforms: *nix

Online Hierarchical Storage Manager (OHSM) is the first attempt towards an enterprise level open source data storage manager which automatically moves data between high-cost and low-cost storage media. Features . Support for ext4 . Relocation in userspace . Ability to dynamically update...


Platforms: *nix

Document clustering project is a data mining suite to cluster a document set. This set of tools was implemented from a series of papers: "Clustering Web Pages Semantically using Combinatorial Topology", "Data mining using granular computing", and "A fast association rule algorithm based on bitmap...


Platforms: *nix

NoteKeeper is a multi-functional hierarchical information manager. Many notes and images can be stored within a single NoteKeeper file and can be grouped into flexible virtual folders enabling easy, intuitive access at all times. Think of it as an electronic scrapbook - one which includes...


Platforms: Windows

A carrier class messaging solution with outstanding technical support, AXIGEN Service Provider Edition provides speed, security and reliability. Its failsafe, intelligent storage system helps you avoid any interruption of service or loss of data. It offers smooth, automatic migration from any...


Platforms: Windows, *nix

Parent Selector Column is intended to lookup to self (containing list) in order to display hierarchical data. Main difference with standard SharePoint Lookup is absence of own item (standard SharePoint Lookup contains own item). Users can also use the picker dialog to choose data from large...


Platforms: Windows

Tasks project features a dynamic hierarchical view of your tasks, scheduling due dates, and associating URLs with and uploading and attaching files to tasks. You have numerous tasks, projects with sub-tasks, related notes and files, billable tasks, and ideas that you want to publish to your...


Platforms: *nix

Repository::Simple is a simple hierarchical repository for Perl. SYNOPSIS use Repository::Simple; my $repository = Repository::Simple->attach( FileSystem => root => /home/foo ); NOTICE: This software is still in development and the interface WILL CHANGE. This is the main module of a...


Platforms: *nix

Aranea is an Open Source Java Hierarchical Model-View-Controller Web Framework that provides a common simple approach to building the web application components, reusing custom or general GUI logic and extending the framework. The framework enforces programming using Object-Oriented techniques...


Platforms: *nix

libferris makes the file system and other hierarchical storage systems easier to use.Other than mounting things as a filesystem, the other core concept of libferris is extraction of interesting metadata from your libferris filesystems. This means that simple things like width and height of an...


Platforms: Windows, Mac, *nix, C/C++, BSD Solaris

Bio::Tools::Run::TribeMCL is a method for clustering proteins into related groups, which are termed protein families. SYNOPSIS use Bio::Tools::Run::TribeMCL; use Bio::SearchIO; # 3 methods to input the blast results # straight forward raw blast output (NCBI or WU-BLAST) my @params =...


Platforms: *nix

gjots marshals and organizes text notes in a convenient, hierarchical way. You can use gjots2 to organise your jottings into a tree structure, adding thoughts and miscellany as you go. You can get it to spit out HTML, XML, postscript, pdf, man etc etc (see the online manual for an example of...


Platforms: *nix

DOM Menu allows developers to add dynamic, hierarchical popup menus on their web pages. The direction of the menu can either be horizontal or vertical and the menu can open (or popout) in either direction. It has both screen edge detection and < select > element detection (for browsers that...


Platforms: *nix

HA/FST is a high availability clustering tool for up to four Solaris nodes. HA/FST project supports any application that can be managed from the command line. HA/FST works similar to other HA tools. Heartbeats sent across a private network are monitored. If these heartbeats fail and subsequent...


Platforms: *nix