Genetic Diseases
PGAPy is a wrapper for pgapack, the parallel genetic algorithm library, a powerfull genetic algorithm library by D. Levine, Mathematics and Computer Science Division Argonne National Laboratory. The library is written in C. PGAPy wraps this library for use with Python. The original pgapack...
Platforms: *nix
License: Freeware | Size: 69.63 KB | Download (93): PGAPy Download |
Acovea implements a genetic algorithm for finding the "best" options for compiling programs with the GCC C and C++ compilers. ACOVEA (Analysis of Compiler Options via Evolutionary Algorithm) implements a genetic algorithm to find the "best" options for compiling programs with the GNU Compiler...
Platforms: *nix
License: Freeware | Size: 399.36 KB | Download (97): Acovea Download |
xl bit is a genetic algorithm base optimization software mimicking the evolution of life. It is known that this evolution of life operates on chromosomes.
User-friendly and no programming needed. (see screenshot)
Very similar to Excel Solver set up.
Maximum 500 population allowed.
3...
Platforms: Windows
License: Demo | Cost: $35.00 USD | Size: 9.8 KB | Download (112): xl bit Download |
This program, BayeScan aims at identifying candidate loci under natural selection from genetic data, using differences in allele frequencies between populations. BayeScan is based on the multinomial-Dirichlet model. One of the simplest possible scenarios covered consists of an island model in...
Platforms: Windows, Mac, Linux
License: Freeware | Size: 3.3 MB | Download (406): BayeScan Download |
UNPHASED is a small, simple, Java based application specially designed to offer users a versatile tool for performing genetic association analysis.
This utility implements maximum-likelihood inference on haplotype and genotype effects while allowing for uncertain phase and missing genotypes....
Platforms: Windows
License: Freeware | Download (391): UNPHASED Download |
Recodon is a population genetic simulator that generates samples of nucleotide and codon sequences from populations with recombination, migration and growth. The last version includes new codon models (M1, M7 y M8) and new output options.
Platforms: Windows
License: Freeware | Size: 1.2 MB | Download (463): Recodon Download |
Schilduil Proc Inbreeding was built as a calculator for inbreeding coefficients and additive genetic relationships that are based on pedigree.
The elements of the relationship matrix represent the additive genetic relationship between two individuals. This is a number between 0 and 2.
The...
Platforms: Windows
License: Freeware | Download (454): Schilduil Proc Inbreeding Download |
Strudel is a graphical utility designed to help you visualize genetic and physical maps of genomes for comparative purposes.
The application aims to let the user examine their data at a variety of different levels of resolution, from entire maps to individual markers, and explore syntenic...
Platforms: Windows, Windows Vista, 7
License: Freeware | Download (454): Strudel Download |
Toolkit for processing genetic data. Currently supports (command-line): Half-IBD (Identity by descent) aka HIRs - between 2 or any number of files (in distances and cM); RAW2PED, PED2RAW conversions; regions of homozygousity and other converters.
Platforms: Mac
License: Freeware | Size: 8.08 MB | Download (57): aisconvert Download |
The script finds a (near) optimal solution to a variation of the "open" M-TSP by setting up a GA to search for the shortest route (least distance needed for each salesman to travel from the start location to unique individual cities and finally to the end location).Each salesman starts at the...
Platforms: Windows, Mac, *nix, Matlab, BSD Solaris
License: Freeware | Download (54): Fixed Endpoints Open Multiple Traveling Salesmen Problem - Genetic Algorithm Download |
Finds a (near) optimal solution to a variation of the M-TSP by setting up a GA to search for the shortest route (least distance needed for each salesman to travel from the start location to individual cities and back to the original starting place).Each salesman starts at the first point, and...
Platforms: Windows, Mac, *nix, Matlab, BSD Solaris
License: Freeware | Download (54): Fixed Start/End Point Multiple Traveling Salesmen Problem - Genetic Algorithm Download |
The algorithm computes the optimal route from a fixed predetermined starting point to all other cities without returning to the starting point. Requirements: - MATLAB 7.6 or higher
Platforms: Windows, Mac, *nix, Matlab, BSD Solaris
License: Freeware | Download (49): Fixed Start Open Traveling Salesman Problem - Genetic Algorithm Download |
Charlemagne is a genetic programming application which aims to be highly configurable and applicable to a broad range of problems.It is written in Python and Lisp and to some degree is extensible in both languages. It features built-in input-output mapping support, but also provides the ability...
Platforms: *nix, Python, BSD
License: Freeware | Download (58): Charlemagne Download |
The function implement the 1D Walash Transform which can be used in signal processing,pattern recognition and Genetic algorithms. The Formula of 1D Walsh Transform is defined as : N-1 q-1 ---- -- 1 | | b[i](m)*b[q-1-i](u) W(u) = --- / f(m)| | (-1) ,u = 0,...,N-1 N ---- | | m=0 i=0 where for...
Platforms: Matlab
License: Freeware | Size: 10 KB | Download (45): Walsh Transform(2D) Download |
The function implement the 1D Walash Transform which can be used in signal processing,pattern recognition and Genetic algorithms. The Formula of 1D Walsh Transform is defined in mfile
Platforms: Matlab
License: Freeware | Size: 10 KB | Download (43): Walsh Transform(1D) Download |
The function generates sequency(Walsh) ordered Hadamard matrix useful for image processing, signal processing, genetic algorithms etc.
Platforms: Matlab
License: Freeware | Size: 10 KB | Download (48): Sequency(Walsh) ordered Hadamard matrix Download |
This demo shows how to use MATLAB, Optimization Toolbox, and Genetic Algorithm and Direct Search Toolbox to optimize the design of a double wishbone suspension system.Note: You will need to have the following products installed in order to run this demo: MATLAB, Simulink, Optimization Toolbox,...
Platforms: Matlab
License: Freeware | Size: 2.02 MB | Download (46): Optimization of a Double Wishbone Suspension System Download |
it is used for genetic algorithm implementation for scheduling in wireless sensor networks
Platforms: Matlab
License: Freeware | Size: 10 KB | Download (49): wireless networks Download |
This program demonstrates the optimization by genetic algorithm to find the global maximum height for thee dimensional multiple peak surface. The GA operates by real coding method with elitism
Platforms: Matlab
License: Freeware | Size: 10 KB | Download (45): Global maximum point for 3D surface using GA Download |
TurboGA is an augmented version of the Matlab script SpeedyGA (also available on File Exchange). TurboGA uses a simple mechanism called clamping, which, according to a new theory about the workings of genetic algorithms (see http://www.cs.brandeis.edu/~kekib/dissertation.html ), should...
Platforms: Matlab
License: Freeware | Size: 10 KB | Download (43): TurboGA: A Simple Genetic Algorithm With a Powerful Performance Enhancing Tweak Download |