Gene Similarity

FastSemSim is specially designed as a handy Python-based efficient implementation of a couple of semantic similarity measures. The main target of the project is to enable fast and easy calculation of similarity between proteins and genes using the Gene Ontology Platforms: Windows

Similarity is a useful program that helps you to find and remove similar, duplicate musical files (MP3, WMA, OGG, ASF, WAV, FLAC, APE, WV) with the same or similar sound content, music tags (ID3,WMF,Vorbis). This is the best program where similarity of a sound part is checked, not just music tags... Platforms: Windows

Visual Similarity Duplicate Image Finder's main goal is to help you find fast all similar and duplicate images in a folder and its sub folders. Visual Similarity Duplicate Image Finder uses advanced algorithms to find similar images in a way that a human does. Due to that fact it can find similar... Platforms: Windows, Windows 7, Windows Server, Other

GENE Graph Export Engine is an advanced XML exporter. GENE Graph Export Engine is a complex convertor/framework for multi-namespace XML transforming and exporting. It is able to convert various XML types including SVG, DocBook, MathML, XSL-FO, and their combinations into a wide area of output... Platforms: *nix

WordNet::Similarity::Visual is a Perl extension for providing visualization tools for WordNet::Similarity. SYNOPSIS Basic Usage Example use WordNet::Similarity::Visual; $gui = WordNet::Similarity::Visual->new; $gui->initialize; This package provides a graphical extension for... Platforms: *nix

WordNet::Similarity::PathFinder is a Perl module to implement path finding methods (by node counting) for WordNet::Similarity measures of semantic relatedness. SYNOPSIS use WordNet::QueryData; my $wn = WordNet::QueryData->new; use WordNet::Similarity::PathFinder; my $obj =... Platforms: *nix

WordNet::Similarity::vector_pairs is a Perl module for computing semantic relatedness of word senses using second order co-occurrence vectors of glosses of the word senses. SYNOPSIS use WordNet::Similarity::vector_pairs; use WordNet::QueryData; my $wn = WordNet::QueryData->new(); my... Platforms: *nix

WordNet::Similarity is a collection of Perl modules for computing measures of semantic relatedness. SYNOPSIS Basic Usage Example use WordNet::QueryData; use WordNet::Similarity::path; my $wn = WordNet::QueryData->new; my $measure = WordNet::Similarity::path->new ($wn); my $value =... Platforms: *nix

This program is a parser that abstract a data structure from a given Entrez Gene record, and users of the parser can decide what to do/extract from the data structure. Perl Entrez Gene Parser project provides Perl parsers for NCBI's Entrez Gene based on regular expression, Parse::RecDescent,... Platforms: Windows, Mac, *nix, Perl, BSD Solaris

This module allows the administrator to create a wide ranging set of similarity calculations. It can out of the box, calculate similar nodes of a specific type using the search index, taxonomy terms and node title. These similarities are calculated on cron run.This module is in the middle of a... Platforms: PHP

Gene Inspector is a unique combination of a versatile electronic laboratory research notebook and a comprehensive sequence analysis product. Using GI, the user has the ability to define an entire 'suite of analyses' that can be performed each time they (or anyone in the lab) has a new sequence,... Platforms: Mac

The Gene Construction Kit allows graphic manipulation of DNA sequences and sophisticated plasmid drawing options. It has an award winning interface design that allows graphic manipulation of DNA sequences in addition to providing sophisticated drawing capabilities. GCK was named the "Best Plasmid... Platforms: Mac

Conrad is both a high performance Conditional Random Field engine which can be applied to a variety of machine learning problems and a specific set of models for gene prediction using semi-Markov CRFs. Platforms: Windows, Mac, Linux

Disease Gene Profiler (DGP) comprises of a set of (bioinformatics) tools that can be used to identify the genes underlying susceptibility to common multifactorial diseases (such as diabetes, asthma and cancer) using freely available datasources. Platforms: Windows, Mac, Linux

Perl Entrez Gene Parser project provides Perl parsers for NCBI's Entrez Gene based on regular expression, Parse::RecDescent, Parse::Yapp and Perl-byacc. Some can parse human genome annotations in minutes. Documentation and user guides are provided. Platforms: Windows, Mac, Linux

The home of the Gene Ontology project on SourceForge, including ontology requests, software downloads, bug trackers, and much, much more. Platforms: Windows, Mac, Linux

Gene-Environment iNteraction Simulator 2 (GENS2) simulates interactions among two genetic and one environmental factor and also allows for epistatic interactions. GENS2 is based on data with realistic patterns of linkage disequilibrium, and imposes no limitations either on the number of... Platforms: Windows, Mac, Linux

GRaPe - a platform-independent software tool for building integrative gene-reaction-protein (GRP) networks. It generates the kinetic equations for each reaction and outputs a SBML document. It also implements two methods for parameter estimation. Platforms: Windows, Mac, Linux

LiveGMS is a PHP/MySQL driven gene editor for the game Creatures 3 / Docking Station. It provides a platform independent online editor with most features other binary genetics editors have. Platforms: Windows, Mac, Linux

Similarity Evaluator is a tool to analyse similarity function implementations and algorithms, where is possible to compare several APIs on performance, best result, similarity and discernability values. Platforms: Windows, Mac, Linux