Gap Penalty

Algorithm::NeedlemanWunsch is a sequence alignment with configurable scoring. SYNOPSIS use Algorithm::NeedlemanWunsch; sub score_sub { if (!@_) { return -2; # gap penalty } return ($_[0] eq $_[1]) ? 1 : -1; } my $matcher = Algorithm::NeedlemanWunsch->new(&score_sub); my $score =... Platforms: *nix

JAligner is an open source Java implementation of the dynamic programming algorithm Smith-Waterman with Gotoh's improvement for biological local pairwise sequence alignment with the affine gap penalty model. Platforms: Windows, Mac, Linux

NeoBio project consists of Bioinformatics algorithms in Java. What algorithms? The current version consists mainly of (pairwise) sequence alignment algorithms such as the classical dynamic programming methods of Needleman & Wunsch (global alignment) and Smith & Waterman (local alignment).... Platforms: *nix

Statistics::Gap Perl module is an adaptation of the Gap Statistic. SYNOPSIS use Statistics::Gap; $predictedk = &gap("prefix", "vec", INPUTMATRIX, "rbr", "h2", 30, 10, rep, 90, 4); OR use Statistics::Gap; $predictedk = &gap("prefix", "vec", INPUTMATRIX, "rbr", "h2", 30, 10, rep, 90, 4,... Platforms: *nix

AcQuest Programming Solutions is pleased to publish AcQuest Tax Penalty & Interest Evaluator. Designed to run on Windows XP, Vista, & Windows 7 systems, the program will calculate and verify federal tax penalties and interest for individuals, corporations, and employers. Calculates interest and... Platforms: Windows, Other

In this game, you need to play penalty shootout with the computer. First, choose your team and the computer's team, then the shootout begin. Use the mouse to point to the position you want to shoot to, when you shoot, there may be some deviations so don't go too far. When the computer shoots, you... Platforms: Windows

A native Macintosh OS X front-end/environment for the GAP computer algebra system. 'Xgap without X11.' Platforms: Mac

GAP is a Generic Jakarta ANT Project file for the complete building of a Java Application from your source to executable jar by simply modifying a simple properties file with details on your project. No knowlege of ANT is required. Great way for the novic Platforms: Windows, Mac, Linux

Magmentis is proud to introduce: Fill the Gap Lite, the new free version of this popular software already used by several hundred thousands of children in schools all over the world (and by more than the 30% of primary schools just in the UK) to improve pupils' literacy and spelling skills.... Platforms: Mac

Magmentis is proud to introduce: Fill the Gap, the new version of this popular software already used by several hundred thousands of children in schools all over the world (and by more than the 30% of primary schools just in the UK) to improve pupils' literacy and spelling skills. This new... Platforms: Mac

In this game you will need to play penalty shootout with another player. Choose your team and then the shootout starts. Use the mouse to point to the position you want to shoot to, when you shoot, there may be some deviations so don't go too far. When the other player shoots, you also use the... Platforms: Mac

Bio::Tools::Run::PiseApplication::fasta is a Bioperl class for sequence database search. Parameters: fasta (Excl) Fasta program query (Sequence) Query sequence File pipe: seqfile seqtype (Excl) Is it a DNA or protein sequence (-n) protein_db (Excl) Protein Database nucleotid_db... Platforms: *nix

AVL Array is an STL-like container for C++ that fills the gap between vector (or deque) and list, providing both fast random access and fast insertion/removal, all O(log n). This is not a map; in an avl_array, the "keys" always range from 0 to size-1, and they automatically change on insertion... Platforms: *nix

THREDDS (short from Thematic Realtime Environmental Distributed Data Services) project is developing middleware to bridge the gap between data providers and data users. The goal is to simplify the discovery and use of scientific data and to allow scientific publications and educational materials... Platforms: *nix

This is a small utility that cleans up the registry in those cases where huge gaps of whitespace is displayed in the add/remove programs control panel applet. The gap is caused by a badly formatted "DisplayedIcon" entry in the uninstall area of the registry or a bad icon file. We read about the... Platforms: Windows

This incredibly accurate Forex Robot is consistantly profitable. This EA trades the weekend gaps that often occur between the close of the forex market on Friday and the Open on Sunday Platforms: Windows, Linux, Linux Gnome, Linux Open Source, MS-DOS, Unix, Other

Generalized linear models (GLMs) are a natural extension of linear regression models in which eta = X*w is related to y by a fixed nonlinearity and a possibly non-Gaussian noise source. Standard linear regression, logistic regression and Poisson regression are all special types of GLMs.This... Platforms: Matlab

Mortgage loan income and amortization management ... track monthly, biweekly, weekly or random mortgage payments ... provisions for penalty or late fees, additional principal, apply escrow taxes and or insurance payments received and disbursed ... unlimited accounts ... includes loan payment... Platforms: Windows, Windows 7

Chronos fills the gap in Windows Mobile operating system by offering Unlimited number of highly customizable alarms : Alarms can be set to signal only on certain days of the week; alarms can be one-time or repetitive; alarm can notify you by playing sounds, turning on/off... Platforms: Palm OS

Chronos fills a gap in Windows Mobile operating systems by offering an unlimited number of highly customizable alarms. Alarms can be set to signal only on certain days of the week; alarms can be one-time or repetitive; alarms can notify you by playing sounds, and turning on/off vibration or... Platforms: Windows CE, Pocket PC, Windows, Handheld/Mobile Other