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Bio::Tools::Run::PiseApplication::align2model is a Bioperl class for align2model - create a multiple alignment of sequences to an existing model. Parameters: align2model (String) run (String) Run name db (Sequence) Sequences to align (-db) model_file (InFile) Model (-i) pipe:...

Bio::Tools::Run::PiseApplication::consensus is a Perl module. Bioperl class for: CONSENSUS Identification of consensus patterns in unaligned DNA and protein sequences (Hertz, Stormo) References: G.Z. Hertz and G.D. Stormo. Identification of consensus patterns in unaligned DNA and protein...

Bio::Tools::Run::PiseApplication::charge is a Perl module. Bio::Tools::Run::PiseApplication::charge Bioperl class for: CHARGE Protein charge plot (EMBOSS) Parameters: (see also: http://bioweb.pasteur.fr/seqanal/interfaces/charge.html for available values): charge (String) init...


Platforms: *nix

Common Data Format is a self-describing data abstraction for the storage and manipulation of multidimensional data in a platform- and discipline-independent fashion. It consists of a scientific data management package (known as the "CDF Library") that allows programmers and application...


Platforms: *nix

DateTime::Format::Pg is a Perl module to parse and format PostgreSQL dates and times. SYNOPSIS use DateTime::Format::Pg; my $dt = DateTime::Format::Pg->parse_datetime( 2003-01-16 23:12:01 ); # 2003-01-16T23:12:01+0200 DateTime::Format::Pg->format_datetime($dt); This module understands...


Platforms: *nix

DateTime::Format::Builder is a Perl module to create datetime parser classes and objects. SYNOPSIS package DateTime::Format::Brief; our $VERSION = 0.07; use DateTime::Format::Builder ( parsers => { parse_datetime => [ { regex => qr/^(d{4})(dd)(dd)(dd)(dd)(dd)$/, params => [qw( year...


Platforms: *nix

DBIx::SQLCrosstab::Format is a Perl module with formats results created by DBIx::SQLCrosstab. SYNOPSIS use DBIx::SQLCrosstab::Format; my $dbh=DBI->connect("dbi:driver:database" "user","password", {RaiseError=>1}) or die "error in connection $DBI::errstrn"; my $params = { dbh => $dbh,...


Platforms: *nix

ATA over Ethernet Tools are intended for use in conjunction with an ATA over Ethernet (AoE) driver for a Linux 2.6 kernel. They perform simple tasks like listing available devices, triggering device discovery, and restricting the network interfaces on which AoE is performed. Whats New in This...


Platforms: *nix

Time::Format is a Perl module for easy-to-use date/time formatting. SYNOPSIS use Time::Format qw(%time %strftime %manip); $time{$format} $time{$format, $unixtime} print "Today is $time{yyyy/mm/dd}n"; print "Yesterday was $time{yyyy/mm/dd, time-24*60*60}n"; print "The time is...


Platforms: *nix

DateTime::Format::Epoch::TJD is a Perl module that can convert DateTimes to/from Truncated Julian Days. SYNOPSIS use DateTime::Format::Epoch::TJD; my $dt = DateTime::Format::Epoch::TJD->parse_datetime( 13244.5 ); # 2004-08-27T00:00:00 DateTime::Format::Epoch::TJD->format_datetime($dt);...


Platforms: *nix

DateTime::Format::Epoch is a Perl module that can convert DateTimes to/from epoch seconds. SYNOPSIS use DateTime::Format::Epoch; my $dt = DateTime->new( year => 1970, month => 1, day => 1 ); my $formatter = DateTime::Format::Epoch->new( epoch => $dt, unit => seconds, type => int, # or...


Platforms: *nix

DateTime::Format::Epoch::DotNet is a Perl module that can convert DateTimes to/from .NET epoch seconds. SYNOPSIS use DateTime::Format::Epoch::DotNet; my $dt = DateTime::Format::Epoch::DotNet->parse_datetime( 1051488000 ); DateTime::Format::Epoch::DotNet->format_datetime($dt); #...


Platforms: *nix

DateTime::Format::Epoch::Unix is a Perl module that can convert DateTimes to/from Unix epoch seconds. SYNOPSIS use DateTime::Format::Epoch::Unix; my $dt = DateTime::Format::Epoch::Unix->parse_datetime( 1051488000 ); # 2003-04-28T00:00:00...


Platforms: *nix

DateTime::Format::Epoch::MacOS is a Perl module that can convert DateTimes to/from Mac OS epoch seconds. SYNOPSIS use DateTime::Format::Epoch::MacOS; my $dt = DateTime::Format::Epoch::MacOS->parse_datetime( 1051488000 ); DateTime::Format::Epoch::MacOS->format_datetime($dt); # 1051488000...


Platforms: *nix

DateTime::Format::Roman is a Perl module with roman day numbering for DateTime objects. SYNOPSIS use DateTime::Format::Roman; my $formatter = DateTime::Format::Roman->new( pattern => %d %f %b %y ); my $dt = DateTime->new( year => 2003, month => 5, day => 28 );...


Platforms: *nix

DateTime::Format::Epoch::RJD is a Perl module that can convert DateTimes to/from Reduced Julian Days. SYNOPSIS use DateTime::Format::Epoch::RJD; my $dt = DateTime::Format::Epoch::RJD->parse_datetime( 53244.5 ); # 2004-08-27T00:00:00 DateTime::Format::Epoch::RJD->format_datetime($dt); #...


Platforms: *nix

DateTime::Format::Epoch::Lilian is a Perl module to convert DateTimes to/from Lilian Days. SYNOPSIS use DateTime::Format::Epoch::Lilian; my $dt = DateTime::Format::Epoch::Lilian->parse_datetime( 53244.5 ); # 2004-08-27T00:00:00 DateTime::Format::Epoch::Lilian->format_datetime($dt); #...


Platforms: *nix

DateTime::Format::Epoch::RataDie is a Perl module that can convert DateTimes to/from Rata Die. SYNOPSIS use DateTime::Format::Epoch::RataDie; my $dt = DateTime::Format::Epoch::RataDie->parse_datetime( $count ); DateTime::Format::Epoch::RataDie->format_datetime($dt); # $count my...


Platforms: *nix

DateTime::Format::Epoch::JD is Perl module Convert DateTimes to/from Julian Days. SYNOPSIS use DateTime::Format::Epoch::JD; my $dt = DateTime::Format::Epoch::JD->parse_datetime( 2453244.5 ); # 2004-08-27T00:00:00 DateTime::Format::Epoch::JD->format_datetime($dt); # 2453244.5 my...


Platforms: *nix

DateTime::Format::Epoch::MJD is a Perl module that can convert DateTimes to/from Modified Julian Days. SYNOPSIS use DateTime::Format::Epoch::MJD; my $dt = DateTime::Format::Epoch::MJD->parse_datetime( 53244 ); # 2004-08-27T00:00:00 DateTime::Format::Epoch::MJD->format_datetime($dt); #...


Platforms: *nix