Dna Sequence Alignment Software

StarORF facilitates the identification of the protein(s) encoded within a DNA sequence. Using StarORF, the DNA sequence is first transcribed into RNA and then translated into all the potential ORFs (Open Reading Frame) encoded within each of the six translation frames (3 in the forward direction...

NGSView is a generally applicable, flexible and extensible next-generation sequence alignment editor. The software allows for visualization and manipulation of millions of sequences simultaneously on a desktop computer, through a graphical interface.

BVTech Plasmid is DNA plasmid drawing software that you can use to draw circle or linear plasmid maps with double strands or a single strand. You can label the plasmid with genes and restriction sites in different colors, text, and styles. Plasmid map can be highly customized. You can arrange...


Platforms: Windows

BVTech Plasmid is DNA plasmid drawing software that you can use to draw circle or linear plasmid maps with double strands or a single strand. You can label the plasmid with genes and restriction sites in different colors, text, and styles. Plasmid map can be highly customized. You can arrange...


Platforms: Windows

4Peaks is a program that helps molecular biologists to visualize and edit their DNA sequence files. At last there is a decent solution for analyzing trace files on the Mac OS X platform, taking another step away from slow and non-native programs from the Mac OS 9 period. Also, 4Peaks supports...


Platforms: Mac

An automatically-updating library of genomic and genetic data; that provides a fully integrated, visually-advanced toolset for - Sequence alignment and phylogenetics - Sequence analysis, Contig assembly, - primers, restriction analysis - BLAST. Protein structure viewing, NCBI, UniProt, Pubmed...


Platforms: Mac

A set of programs for multiple sequence alignment and analysis. The programs use an expandable user interface which allows the addition of external analysis functions without any rewriting of code. The system supports several data types, nucleic and amino acid sequences, text, and masking...


Platforms: Mac

BACContigEditor is a simple sequence alignment editing tool, written in Java. It is originally developed for finishing BAC shotgun sequencing projects, but the program could be easily extended to the whole genome project.


Platforms: Windows, Mac, Linux

JAligner is an open source Java implementation of the dynamic programming algorithm Smith-Waterman with Gotoh's improvement for biological local pairwise sequence alignment with the affine gap penalty model.


Platforms: Windows, Mac, Linux

MSA2SNP is a tool for mining SNP sites in multiple sequence alignment (MSA). This tool inherits the easy-to-use interface from MEGA4 Explorer with advance data presentation. MSA2SNP lets you visualize alignments and import from CLUSTAL program directly.


Platforms: Mac

A tool to compare two Protein Sequences and show similarities with the help of dotplot.


Platforms: Windows, Mac, Linux

Sequence studio main package provides classes and interfaces for various kinds of sequence alignment. Differently from regular expressions it computes similarity with two initially unknown strings. Project page provides code generating applet.


Platforms: Windows, Mac, Linux

An implementation of the Smith-Waterman local sequence alignment algorithm. See our sister project global alignment using Needleman-Wunsch: http://sourceforge.net/projects/needlemanwunsch/


Platforms: Mac, BSD, Linux

SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. SAM aims to be a format that: * Is flexible enough to store all the alignment information generated by various alignment programs; * Is simple enough to be easily generated by alignment...


Platforms: Mac

A GUI program to create the plasmid database forms for BGME lab. This program presents user with a data entry form for entering plasmid information and automatically converts DNA sequence to protein, aligns it, and creates text output file.


Platforms: Mac

The classic genotyping approach has been based on phylogenetic analysis, starting with a multiple sequence alignment. Genotypes are then established by expert examination of phylogenetic trees. However, such methods are suboptimal for a rapidly growing dataset, because they require significant...


Platforms: Mac

BioLZMA is a user-friendly cross-platform DNA data compression software developed by Shenzhen University - Texas Instruments DSPs Laboratory. Written in Python, BioLZMA is open source under license GNU GPL v3. BioLZMA achieves higher compression ratio than conventional general-purpose data...


Platforms: Mac

Lucy is a program for DNA sequence quality trimming and vector removal. Its purpose is to process DNA sequence data acquired from DNA sequencers to prepare the data for downstream processing applications such as genome assembly.


Platforms: *nix

Gene Construction KitO brings intuitive productivity to the molecular biology researcher's MAC, allowing effortless manipulation of DNA - either graphically or as sequence text. GCK eliminates tedious examination of sequence data by automatically identifying ORF's and silent mutations, and easily...


Platforms: Mac

The Gene Construction Kit allows graphic manipulation of DNA sequences and sophisticated plasmid drawing options. It has an award winning interface design that allows graphic manipulation of DNA sequences in addition to providing sophisticated drawing capabilities. GCK was named the "Best Plasmid...


Platforms: Mac