Computational

Fyre project is a tool for producing computational artwork based on histograms of iterated chaotic functions. At the moment, it implements the Peter de Jong map in a fixed-function pipeline with an interactive GTK+ frontend and a command line interface for easy and efficient rendering of... Platforms: *nix

Numarray provides array manipulation and computational capabilities similar to those found in IDL, Matlab, or Octave. Using numarray, it is possible to write many efficient numerical data processing applications directly in Python without using any C, C++ or Fortran code (as well as doing such... Platforms: *nix

StrBio is a set of Java classes and libraries useful for development of software for computational structural biology research. They are licenced under the LGPL. he strbio.org classes are the basis for several published research projects, including the Pred2ary secondary structure prediction... Platforms: *nix

Knorpora is a modified version of the Knoppix 3.3 Live CD for students of corpus-based computational linguistics. Like Knoppix, the Knorpora CD allows you to run a fully operational Debian/Linux operating system from the CD-ROM drive, without installing anything on the computer. The Knorpora... Platforms: *nix

Open source parallelized fractal generator for Mac clusters. This code is meant to help people experiment with and learn parallel programming as well as show how an interactive parallel application is written for clusters. You may try different parallelization techniques or substitute different... Platforms: Mac

NiCE, short for NEAMS Integrated Computational Environment is a simple, Java based application intended to allow flexible development and composition of a wide range of simulations, models and analysis tools for NEAMS integrated performance and safety codes. for WindowsAll Platforms: Windows

The purpose of this program is to get you started quickly with Neural Network without having to go through lengthy theory of the Neural Network background. Once you understand these programs you will be able to consult the Neural Network materials on a need basis. Spice-SOM's arm is to introduce... Platforms: Windows, Windows Vista, 7

PyRx is a Virtual Screening software for Computational Drug Discovery that can be used to screen libraries of compounds against potential drug targets. PyRx enables Medicinal Chemists to run Virtual Screening from any platform and helps users in every step of this process - from data preparation... Platforms: Windows

MicroGP is designed as a computational approach for autonomously pursuing a goal defined by users. To this end, candidate solutions for the given task are repeatedly modified, evaluated and enhanced. MicroGP is an evolutionary algorithm since the alteration process mimics some principles of... Platforms: Windows

SDGB, also know as Software for Determining Balanced Graph is designed as a computational method for determining whether a given graph with weights on the vertices, is balanced. SDGB was developed with the help of the Java programming language and can run on multiple platforms. Platforms: Windows

Snifflib is a Java based numerical library designed to provide honest-to-goodness N-dimensional array construction and manipulation along with standard linear algebra functionality as well as statistics and computational routines in the Java language. for WindowsAll Platforms: Windows

Provides automatic beats-per-minute detection using computational music analysis algorithms. Analyzes your collection of music files and iTunes playlists and exports the resulting BPM values to iTunes or the MP3 ID3v2 tag - Fast and high precision analysis - Write BPM to MP3 ID3v2 tag - Import... Platforms: Mac

trendingBot is a powerful numerical simulation tool bringing some fresh air into the computational modelling community. Its innovative algorithm (fully developed by our engineers) performs as-detailed-as-necessary calculations, reduces the number of simplifications and avoids the use of arbitrary... Platforms: Windows

Most file encryptors use methods that rely on the theory of computational security, that is difficulty of key factorisation prevents decryption of the file. But this method may not work forever. It used to be considered that a 56 bit key was unbreakable to brute force attacks, but the government... Platforms: Windows

The Kalman filter is a set of mathematical equations that provides an efficient computational (recursive) means to estimate the state of a process, in a way that minimizes the mean of the squared error. The filter is very powerful in several aspects: it supports estimations of past, present, and... Platforms: Windows

The project aims to extend the PHP scripting language to enable PHP developers to write bioinformatics applications more rapidly than if they had to start from scratch using 'vanilla php'. Platforms: Windows, Mac, Linux

ccwatcher monitors the progress of computational chemistry calculations during runtime. It has both a GUI and a 'Command Line Interface' to which it parses important output and plots SCF energies. Avogadro plugin capability is planned. Platforms: Windows, Mac, Linux

Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines. It contains pre-built components for common bioinformatics analysis tasks. These components can be arranged graphically to form highly-configurable pipelines. Each analysis component... Platforms: *nix

Ericscript is a computational framework to detect gene fusions from paired end RNA-seq data with high sensitity and specificity. Platforms: Windows, Mac, Linux

The Efficient XML Interchange (EXI) format is a very compact representation for the Extensible Markup Language (XML) Information Set that is intended to simultaneously optimize performance and the utilization of computational resources. Platforms: Windows, Mac, Linux