Clade

Getopt::Clade is a Perl module with command-Line Argument Declaration Engine. This module is a placeholder for the real Getopt::Clade module. The module was supposed to be released by July 2005, to support the book "Perl Best Practices". Unfortunately, due to a series of family medical crises,...


Platforms: *nix

Phylo-mLogo is an interactive multiple-logo visualization tool for large-number sequence alignments which allows the user to visualize the global profile of whole multiple sequence alignment and to hierarchically visualize homologous logos of each clade simultaneously.


Platforms: Mac

Bio::NEXUS::Node is a Perl module that provides functions for manipulating nodes in trees. SYNOPSIS new Bio::NEXUS::Node; METHODS new Title : new Usage : $node = new Bio::NEXUS::Node(); Function: Creates a new Bio::NEXUS::Node object Returns : Bio::NEXUS::Node object Args : none...


Platforms: *nix

Probability of Synapomorphy was designed as an R script that implements a new method for evaluating synapomorphy on phylogenetic trees. All you have to do is install R and run the script. A method that quantifies the pattern of character state distribution over a cladogram and as such is free...


Platforms: Windows