Bioinformatics Institute

A collaborative workflow builder and enactor for e-Sciences, in particular bioinformatics.

TijdR aims to be a time tracking application meeting the requirements and needs of a scientific institute. TijdR is concieved as a three tier implementation and is written in Java.

The Video Annotation and Reference System (VARS) is a software interface and database system that provides tools for describing, cataloging, retrieving, and viewing the visual, descriptive, and quantitative data associated with video. Developed by the Monterey Bay Aquarium Research Institute...


Platforms: *nix

Sight provides a friendly interface to create and connect agents for bioinformatics. The workflow supports multiple responses to a single request, structure transforms, filters and request history access.Can talk with ordinary http servers (get and post)


Platforms: Windows, Mac, Linux

wiwwu LaTeX styles is a collection of LaTeX classes and style files for generating term papers, theses and presentations using the design that is proposed by the institute for information systems at the WWU MALnster, Germany.


Platforms: Windows, Mac, Linux

This application allows you to calculate interests of italian law or agreement, using a fixed rate provided by the Official Reference Rate determined by the European Central Bank (ex TUS) or the Prime Rate Interbank, and / or revaluation ISTAT (Italian Institute of Statistics) on a given capital....


Platforms: Mac

The sun has set at the Peggle Institute, but the bouncy delight has just begun! Join the Peggle Masters on a dreamtime adventure of alter egos and peg-popping action. Stay up late to aim, shoot and clear orange pegs from 60 levels, and bask in Extreme Fever glory under the silver moon. Then, put...


Platforms: Mac

The BioPHP Project is a non-profit, open source software project that aims to extend the PHP scripting language so it can be used to develop bioinformatics applications. BioPHP is NOT a bioinformatics application. Rather, it is a collection of tools to help PHP developers write bioinformatics...


Platforms: Windows, Mac, *nix, PHP, BSD Solaris

MGWT: Identification of protein coding regions using the ModifiedGabor-wavelet transform.Sequence of test:F56F11.4.fasta (included into the zip file)http://www.ncbi.nlm.nih.gov/entrez/viewer....de&val=AF099922http://www.vision.ime.usp.br/~jmena/projec...ome_results/F5/References:[1] J. P....


Platforms: Matlab

This function contains the well known greedy algorithm for solving Set Cover problem (ChvdodAtal, 1979), with two small modifications:* In case of more than one possible choice at a certain step, the biggest set is chosen;* Once the solution is found, we check the selected sets to find a better...


Platforms: Matlab

Maximum length sequence assuming distinctvalues = baseVal^powerVal-1 [ms]=mseqSearch(powerVal,baseVal) OUTPUT: ms: generated maximum length sequence, of length basisVal^powerVal-1 such that all values occur with equal frequency=basisVal except zero, which occurs basisVal-1 times INPUT: baseVal:...


Platforms: Matlab

It is application of solving ODE model pacemaker VI1 of cardiac cells with function ODE45 mat lab.It is first work objectifs for developing M-File-S-Function with Simulink-Mat lab for modele pacemaker VI1 of cardiac cells and Heart VI1 with Simulink Platform in Free SimCardiology in...


Platforms: Matlab

PLOTPHYTREE(TREE) renders a phylogenetic tree object into a MATLAB figure as aphylogram with equal angle algorithm.plotphytree(...,'ROTATION',value) will orient the phylogenetic tree within the figure window. Positive angles cause counterclockwise rotation, otherwise clockwise...


Platforms: Matlab

The CMVE toolbox estimates missing values by using correlation structure of the data. The software can be used to impute missing values in any correlated data especally microarray gene expression data. The imputation performance of the software has proven significant affect on gene regulatory...


Platforms: Matlab

We attempt to reproduce and efficiently implement in MATLAB publicly available methods of Affymetrix MAS 5 and GCOS 1.2 software that perform single-array and comparison analysis for Affymetrix data given by CEL and CDF files and create corresponding CHP data structures:1. CHP data structure is...


Platforms: Matlab

MATLAB Builder for COM enables you to deploy MATLAB algorithms as COM objects, which can be used on any web server on a Microsoft operating system. The MATLAB based COM object will handle your technical computing, while integrating with a front-end web application built using industry-standard...


Platforms: Matlab

Performs Mantel-Haenszel's test for k strata of 2x2 tables.Mantel and Haenszel proposed this asymptotic test based on the chi-2 distribution. Assuming no three-way interaction (k independent strata). Ref.: DeltaProt toolbox at http://services.cbu.uib.no/software/deltaprot/Input: X: data matrix...


Platforms: Matlab

Innovative applications of MathWorks products to advance our understanding of the universe, measure and predict natural phenomena, manage resources, and mitigate the environmental effects of industrialization.Department of AgridlTCculture and Agri-Food Canada (AAFC)Smithsonian Astrophysical...


Platforms: Matlab

Bio link contains solutions to some topics in biology and bioinformatics. The solutions will be made available as soon as they are developed. Therefore they may contain bugs. Please let me know if you encounter a bug so that it can be fixed asap. Most tools will be in JAVA. The jar files can be...


Platforms: Matlab

This function displays a graph of the inheritance hierarchy of Matlab Object Oriented Code. It finds all classes below the current working directory and all super classes on the Matlab Path and displays the graph using the bioinformatics toolbox biograph function.


Platforms: Matlab