Bioedit Sequence Alignment Editor

Geneious Pro is an integrated, cross-platform bioinformatics software suite for manipulating, finding, sharing, and exploring biological data such as DNA sequences or proteins, phylogenies, 3D structure information, publications, etc. It features sequence alignment and phylogenetic analysis,...

MayaChemTools is a collection of command line Perl scripts to work with SD files, CSV/TSV text files, Sequence/Alignments files, PDB files, and databases: - splitting, joining, merging, and sorting SD and text files; merging text files into SD files; splitting SD files into MDL MOL files; -...

Sequence Logos are a common technique for visualizing the conservation of positions within a multiple sequence alignment. The technique creates an image where the height of the letter represents its sequence conservation.The Matlab bioinformatics toolbox has a function which performs this...


Platforms: Matlab

Welcome to the SRMA home page. SRMA is a short read micro re-aligner for next-generation high throughput sequencing data. Sequence alignment algorithms examine each read independently. When indels occur towards the ends of reads, the alignment can lead to false SNPs as well as improperly placed...


Platforms: Mac

UGENE is a free cross-platform genome analysis suite. It works perfectly on Windows, Mac OS or Linux and requires only a few clicks to install. Features: * Multiple sequence alignment using MUSCLE 3, KAlign, Clustal; * HMM profiles build and search, based on the source of HMMER 2 and HMMER...


Platforms: Mac

CILib comes from Computational Intelligence Library. CILib is a collaborative research framework for developing Computational Intelligence algorithms in the fields of swarm intelligence, evolutionary computing, neural networks, artificial immune systems, and fuzzy logic. Whats New in This...


Platforms: *nix

The Gene Construction Kit allows graphic manipulation of DNA sequences and sophisticated plasmid drawing options. It has an award winning interface design that allows graphic manipulation of DNA sequences in addition to providing sophisticated drawing capabilities. GCK was named the "Best Plasmid...


Platforms: Mac

Geneious Basic is your personalized library of genomic and genetic data; that provides a fully integrated, visually advanced toolset for:Sequence alignment and phylogeneticsSequence analysisBLAST, Protein structure viewing, NCBI, EMBL, Pubmed auto-find & moreAPI for creating your own plugins...


Platforms: Mac

AlleleID is a comprehensive desktop tool designed to address the challenges of pathogen detection, bacterial identification or taxa/species discrimination using microarrays and TaqMan® and molecular beacon qPCR assays. With ClustalW multiple sequence alignment at its core, AlleleID can design...


Platforms: Mac

Geneious is a useful, unique and easy-to-use software system which has been designed to greatly speed up and simplify the research in molecular biology and biochemistry. Geneious is a cross-platform research engine for the retrieval, organization and analysis of biomolecular data that allows...


Platforms: Windows

Geneious is a useful, unique and easy-to-use software system which has been designed to greatly speed up and simplify the research in molecular biology and biochemistry. Geneious is a cross-platform research engine for the retrieval, organization and analysis of biomolecular data that allows...


Platforms: Windows

3D Genome Tuner draws circular genome map and enables viewing multi-genomes in 3D context. It also provides genome analysis and sequence alignment, making it a powerful tool in genome studies and demonstrations.


Platforms: Windows, Mac, Linux

LSC Editor is designed to be a graphical editor and code generator for Live Sequence Charts (LSCs). The code generated follows a simple execution mechanism. It shows a possible execution path. for WindowsAll


Platforms: Windows

This page describes a freely downloadable color sequence editor called CIEluv_CSE. It is optimized to create "spiral color sequences" (Ware, 1988). Read on to find out what a spiral color sequence is and why it is a good idea. Pseudo-color sequences are sequences of colors used to visually code...


Platforms: Mac

Hebrew Editor is a tool that allows Hebrew-speaking users to create and edit Hebrew/English LaTeX documents. This package provides a text (terminal) based word processor which is extremely LaTeX-oriented. The editor also provides on-the-fly spell checking, multiple file editing, unlimited undo...


Platforms: *nix

The EM-1 Editor is a Pattern Editor and Manager for the Korg Electribe EM-1 Groovebox. It comes with a full Step Sequencer emulation, a Motion Sequence Editor, Piano Roll Editor, Pattern Matrix etc. New in 2.00: Fader Automatization added, Tutorials added, Piano Roll Editor enhanced etc......


Platforms: Windows

Edit Java, html, xml, perl, php, css and text documents. Color highlighting for the mentioned languages and posibility to define your own color highlighting for other languages. Other features in this program includes: tools to compile - debug and run java documents, undo / redo feature, tools to...


Platforms: Windows

Trace Modeler is an easy to use and smart editor for UML sequence diagrams... Ideal for documenting existing systems and brainstorming new designs... And fast too! It instantly updates the diagram layout, freeing you to focus on the actual content... The look of your diagrams is controlled by...


Platforms: Windows

The STed is the high-performance MIDI sequence editor / Music composer system. It had been working on X680x0 old Japanese personal workstation. The STed was originally developed by Mr. Takayuki "TURBO" Toda. Through many volunteers good office the source code of the STed has been opened. Since...


Platforms: *nix

Leawo Video Editor is the most complete and sophisticated video editing software that allows you to input various source files from different origins, edit them with special effects, transitions and titles in the award-winning timeline panel and at last, export your video creations in multiple...


Platforms: Windows